Dr Darren Soanes
Research Fellow

Key publications | Publications by category | Publications by year

Key publications



Soanes D, Richards TA (2014). Horizontal gene transfer in eukaryotic plant pathogens. Annu Rev Phytopathol, 52, 583-614. Abstract.  Author URL. DOI.
Soanes DM, Chakrabarti A, Paszkiewicz KH, Dawe AL, Talbot NJ (2012). Genome-wide transcriptional profiling of appressorium development by the rice blast fungus Magnaporthe oryzae. PLoS Pathog, 8(2). Abstract.  Author URL.  Full text. DOI.
Richards TA, Soanes DM, Jones MDM, Vasieva O, Leonard G, Paszkiewicz K, Foster PG, Hall N, Talbot NJ (2011). Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes. Proc Natl Acad Sci U S A, 108(37), 15258-15263. Abstract.  Author URL. DOI.
Soanes DM, Talbot NJ (2010). Comparative genome analysis reveals an absence of leucine-rich repeat pattern-recognition receptor proteins in the kingdom Fungi. PLoS One, 5(9). Abstract.  Author URL. DOI.
Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, Stüber K, Ver Loren van Themaat E, Brown JKM, Butcher SA, Gurr SJ, et al (2010). Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science, 330(6010), 1543-1546. Abstract.  Author URL. DOI.
Soanes DM, Alam I, Cornell M, Wong HM, Hedeler C, Paton NW, Rattray M, Hubbard SJ, Oliver SG, Talbot NJ, et al (2008). Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis. PLoS One, 3(6). Abstract.  Author URL. DOI.

Publications by category


Journal articles

Sambles C, Middelhaufe S, Soanes D, Kolak D, Lux T, Moore K, Matoušková P, Parker D, Lee R, Love J, et al (2017). Genome sequence of the oleaginous yeast Rhodotorula toruloides strain CGMCC 2.1609. Genomics Data Full text. DOI.
Kilaru S, Schuster M, Studholme D, Soanes D, Lin C, Talbot NJ, Steinberg G (2015). A codon-optimized green fluorescent protein for live cell imaging in Zymoseptoria tritici. Fungal Genet Biol, 79, 125-131. Abstract.  Author URL. DOI.
Thornton CR, Ryder LS, Le Cocq K, Soanes DM (2015). Identifying the emerging human pathogen Scedosporium prolificans by using a species-specific monoclonal antibody that binds to the melanin biosynthetic enzyme tetrahydroxynaphthalene reductase. Environmental Microbiology, 17(4), 1023-1048. Full text. DOI.
Penn TJ, Wood ME, Soanes DM, Csukai M, Corran AJ, Talbot NJ (2015). Protein kinase C is essential for viability of the rice blast fungus Magnaporthe oryzae. Molecular Microbiology, 98(3), 403-419. Abstract. DOI.
Stairs CW, Eme L, Brown MW, Mutsaers C, Susko E, Dellaire G, Soanes DM, Van Der Giezen M, Roger AJ (2014). A SUF Fe-S cluster biogenesis system in the mitochondrion-related organelles of the anaerobic protist Pygsuia. Current Biology, 24(11), 1176-1186. Abstract. DOI.
bin Yusof MT, Kershaw MJ, Soanes DM, Talbot NJ (2014). FAR1 and FAR2 regulate the expression of genes associated with lipid metabolism in the rice blast fungus Magnaporthe oryzae. PLoS One, 9(6). Abstract.  Author URL. DOI.
Bielska E, Schuster M, Roger Y, Berepiki A, Soanes DM, Talbot NJ, Steinberg G (2014). Hook is an adapter that coordinates kinesin-3 and dynein cargo attachment on early endosomes. J Cell Biol, 204(6), 989-1007. Abstract.  Author URL. DOI.
Soanes D, Richards TA (2014). Horizontal gene transfer in eukaryotic plant pathogens. Annu Rev Phytopathol, 52, 583-614. Abstract.  Author URL. DOI.
Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, et al (2013). Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature, 499(7457), 209-213. Abstract.  Author URL. DOI.
Campbell SE, Williams TA, Yousuf A, Soanes DM, Paszkiewicz KH, Williams BAP (2013). The Genome of Spraguea lophii and the Basis of Host-Microsporidian Interactions. PLoS Genet, 9(8). Abstract.  Author URL. DOI.
Soanes DM, Chakrabarti A, Paszkiewicz KH, Dawe AL, Talbot NJ (2012). Genome-wide transcriptional profiling of appressorium development by the rice blast fungus Magnaporthe oryzae. PLoS Pathog, 8(2). Abstract.  Author URL.  Full text. DOI.
He M, Kershaw MJ, Soanes DM, Xia Y, Talbot NJ (2012). Infection-associated nuclear degeneration in the rice blast fungus Magnaporthe oryzae requires non-selective macro-autophagy. PLoS One, 7(3). Abstract.  Author URL.  Full text. DOI.
Ryder LS, Harris BD, Soanes DM, Kershaw MJ, Talbot NJ, Thornton CR (2012). Saprotrophic competitiveness and biocontrol fitness of a genetically modified strain of the plant-growth-promoting fungus Trichoderma hamatum GD12. Microbiology, 158(Pt 1), 84-97. Abstract.  Author URL. DOI.
Richards TA, Leonard G, Soanes DM, Talbot NJ (2011). Gene transfer into the fungi. Fungal Biology Reviews, 25(2), 98-110. Abstract. DOI.
Amselem J, Cuomo CA, van Kan JAL, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S, et al (2011). Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLoS Genet, 7(8). Abstract.  Author URL.  Full text. DOI.
Richards TA, Soanes DM, Jones MDM, Vasieva O, Leonard G, Paszkiewicz K, Foster PG, Hall N, Talbot NJ (2011). Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes. Proc Natl Acad Sci U S A, 108(37), 15258-15263. Abstract.  Author URL. DOI.
Leonard G, Soanes DM, Stevens JR (2011). Resolving the question of trypanosome monophyly: a comparative genomics approach using whole genome data sets with low taxon sampling. Infect Genet Evol, 11(5), 955-959. Abstract.  Author URL. DOI.
Li Y, Liang S, Yan X, Wang H, Li D, Soanes DM, Talbot NJ, Wang Z, Wang Z (2010). Characterization of MoLDB1 required for vegetative growth, infection-related morphogenesis, and pathogenicity in the rice blast fungus Magnaporthe oryzae. Mol Plant Microbe Interact, 23(10), 1260-1274. Abstract.  Author URL. DOI.
Soanes DM, Talbot NJ (2010). Comparative genome analysis reveals an absence of leucine-rich repeat pattern-recognition receptor proteins in the kingdom Fungi. PLoS One, 5(9). Abstract.  Author URL. DOI.
Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, Stüber K, Ver Loren van Themaat E, Brown JKM, Butcher SA, Gurr SJ, et al (2010). Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science, 330(6010), 1543-1546. Abstract.  Author URL. DOI.
Rispail N, Soanes DM, Ant C, Czajkowski R, Grünler A, Huguet R, Perez-Nadales E, Poli A, Sartorel E, Valiante V, et al (2009). Comparative genomics of MAP kinase and calcium-calcineurin signalling components in plant and human pathogenic fungi. Fungal Genet Biol, 46(4), 287-298. Abstract.  Author URL. DOI.
Richards TA, Soanes DM, Foster PG, Leonard G, Thornton CR, Talbot NJ (2009). Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi. The Plant Cell, 21, 1897-1911.
Soanes DM, Alam I, Cornell M, Wong HM, Hedeler C, Paton NW, Rattray M, Hubbard SJ, Oliver SG, Talbot NJ, et al (2008). Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis. PLoS One, 3(6). Abstract.  Author URL. DOI.
Soanes DM, Talbot NJ (2008). Moving targets: rapid evolution of oomycete effectors. Trends Microbiol, 16(11), 507-510. Abstract.  Author URL. DOI.
Alam, I. Soanes, D.M. Wong, H.M. (2007). Comparative genome analysis across a kingdom of eukaryotic organisms: specialization and diversification of the fungi. Genome Research, 17, 1809-1822.
Wang Z-Y, Soanes DM, Kershaw MJ, Talbot NJ (2007). Functional analysis of lipid metabolism in Magnaporthe grisea reveals a requirement for peroxisomal fatty acid beta-oxidation during appressorium-mediated plant infection. Mol Plant Microbe Interact, 20(5), 475-491. Abstract.  Author URL. DOI.
Richards, T.A. Talbot, N.J. (2007). Insights from sequencing fungal and oomycete genomes: What can we learn about plant disease and the evolution of pathogenicity?. The Plant Cell, 19, 3318-3326.
Hedler C, Wong HM, Cornell MJ, Alam I, Soanes DM, Rattray M, Hubbard SJ, Talbot NJ, Oliver SG, Paton N, et al (2007). e-Fungi: a Data Resource for Comparative Analysis of Fungal Genomes. BMC Genomics, 8 Full text.
Soanes DM, Talbot, N.J. (2006). Comparative genomic analysis of phytopathogenic fungi using expressed sequence tag (EST) collections. Molecular Plant Pathology, 7, 61-70.
Wang, Z.Y. Talbot, N.J. (2006). Peroxisomal carnitine acetyl transferase is required for elaboration of penetration hyphae during plant infection by Magnaporthe grisea. Molecular Microbiology, 61, 46-60.
Soanes DM, Talbot NJ (2005). A bioinformatic tool for analysis of EST transcript abundance during infection-related development by Magnaporthe grisea. Mol Plant Pathol, 6(5), 503-512. Abstract.  Author URL. DOI.
Talbot, N.J. Ebbole, D.J. (2005). The genome sequence of the rice blast fungus Magnaporthe grisea. Nature, 434, 980-986.
Wang Z-Y, Jenkinson JM, Holcombe LJ, Soanes DM, Veneault-Fourrey C, Bhambra GK, Talbot NJ (2005). The molecular biology of appressorium turgor generation by the rice blast fungus Magnaporthe grisea. Biochem Soc Trans, 33(Pt 2), 384-388. Abstract.  Author URL. DOI.
Giles PF, Soanes DM, Talbot NJ (2003). A relational database for the discovery of genes encoding amino acid biosynthetic enzymes in pathogenic fungi. Comp Funct Genomics, 4(1), 4-15. Abstract.  Author URL. DOI.
Soanes DM, Skinner W, Keon J, Hargreaves J, Talbot NJ (2002). Genomics of phytopathogenic fungi and the development of bioinformatic resources. Mol Plant Microbe Interact, 15(5), 421-427. Abstract.  Author URL. DOI.
Soanes DM, Kershaw MJ, Cooley RN, Talbot NJ (2002). Regulation of the MPG1 hydrophobin gene in the rice blast fungus Magnaporthe grisea. Mol Plant Microbe Interact, 15(12), 1253-1267. Abstract.  Author URL. DOI.

Chapters

Jenkinson JM, Wilson RA, Cartwright Z, Soanes DM, Kershaw MJ, Talbot NJ (2007). Functional genomics of plant infection by the rice blast fungus magnaporthe grisea. In  (Ed) Fungi in the Environment, 227-254.  Abstract. DOI.
Soanes, D. Talbot, N.J. (2004). Functional Genomics of the rice blast fungus Magnaporthe grisea. In Elsevier BV (Ed) Fungal Genomics, Applied Mycology and Biotechnology Volume 4.

Conferences

Richards T, Soanes DM, Foster PG, Leonard G, Talbot NJ (2009). The role of horizontal gene transfer in the evolution of trophic mechanisms across the eukaryotes.  Author URL. DOI.

Publications by year



2017

Sambles C, Middelhaufe S, Soanes D, Kolak D, Lux T, Moore K, Matoušková P, Parker D, Lee R, Love J, et al (2017). Genome sequence of the oleaginous yeast Rhodotorula toruloides strain CGMCC 2.1609. Genomics Data Full text. DOI.

2015

Kilaru S, Schuster M, Studholme D, Soanes D, Lin C, Talbot NJ, Steinberg G (2015). A codon-optimized green fluorescent protein for live cell imaging in Zymoseptoria tritici. Fungal Genet Biol, 79, 125-131. Abstract.  Author URL. DOI.
Thornton CR, Ryder LS, Le Cocq K, Soanes DM (2015). Identifying the emerging human pathogen Scedosporium prolificans by using a species-specific monoclonal antibody that binds to the melanin biosynthetic enzyme tetrahydroxynaphthalene reductase. Environmental Microbiology, 17(4), 1023-1048. Full text. DOI.
Penn TJ, Wood ME, Soanes DM, Csukai M, Corran AJ, Talbot NJ (2015). Protein kinase C is essential for viability of the rice blast fungus Magnaporthe oryzae. Molecular Microbiology, 98(3), 403-419. Abstract. DOI.

2014

Stairs CW, Eme L, Brown MW, Mutsaers C, Susko E, Dellaire G, Soanes DM, Van Der Giezen M, Roger AJ (2014). A SUF Fe-S cluster biogenesis system in the mitochondrion-related organelles of the anaerobic protist Pygsuia. Current Biology, 24(11), 1176-1186. Abstract. DOI.
bin Yusof MT, Kershaw MJ, Soanes DM, Talbot NJ (2014). FAR1 and FAR2 regulate the expression of genes associated with lipid metabolism in the rice blast fungus Magnaporthe oryzae. PLoS One, 9(6). Abstract.  Author URL. DOI.
Bielska E, Schuster M, Roger Y, Berepiki A, Soanes DM, Talbot NJ, Steinberg G (2014). Hook is an adapter that coordinates kinesin-3 and dynein cargo attachment on early endosomes. J Cell Biol, 204(6), 989-1007. Abstract.  Author URL. DOI.
Soanes D, Richards TA (2014). Horizontal gene transfer in eukaryotic plant pathogens. Annu Rev Phytopathol, 52, 583-614. Abstract.  Author URL. DOI.

2013

Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, et al (2013). Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature, 499(7457), 209-213. Abstract.  Author URL. DOI.
Campbell SE, Williams TA, Yousuf A, Soanes DM, Paszkiewicz KH, Williams BAP (2013). The Genome of Spraguea lophii and the Basis of Host-Microsporidian Interactions. PLoS Genet, 9(8). Abstract.  Author URL. DOI.

2012

Soanes DM, Chakrabarti A, Paszkiewicz KH, Dawe AL, Talbot NJ (2012). Genome-wide transcriptional profiling of appressorium development by the rice blast fungus Magnaporthe oryzae. PLoS Pathog, 8(2). Abstract.  Author URL.  Full text. DOI.
He M, Kershaw MJ, Soanes DM, Xia Y, Talbot NJ (2012). Infection-associated nuclear degeneration in the rice blast fungus Magnaporthe oryzae requires non-selective macro-autophagy. PLoS One, 7(3). Abstract.  Author URL.  Full text. DOI.
Ryder LS, Harris BD, Soanes DM, Kershaw MJ, Talbot NJ, Thornton CR (2012). Saprotrophic competitiveness and biocontrol fitness of a genetically modified strain of the plant-growth-promoting fungus Trichoderma hamatum GD12. Microbiology, 158(Pt 1), 84-97. Abstract.  Author URL. DOI.

2011

Richards TA, Leonard G, Soanes DM, Talbot NJ (2011). Gene transfer into the fungi. Fungal Biology Reviews, 25(2), 98-110. Abstract. DOI.
Amselem J, Cuomo CA, van Kan JAL, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S, et al (2011). Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLoS Genet, 7(8). Abstract.  Author URL.  Full text. DOI.
Richards TA, Soanes DM, Jones MDM, Vasieva O, Leonard G, Paszkiewicz K, Foster PG, Hall N, Talbot NJ (2011). Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes. Proc Natl Acad Sci U S A, 108(37), 15258-15263. Abstract.  Author URL. DOI.
Leonard G, Soanes DM, Stevens JR (2011). Resolving the question of trypanosome monophyly: a comparative genomics approach using whole genome data sets with low taxon sampling. Infect Genet Evol, 11(5), 955-959. Abstract.  Author URL. DOI.

2010

Li Y, Liang S, Yan X, Wang H, Li D, Soanes DM, Talbot NJ, Wang Z, Wang Z (2010). Characterization of MoLDB1 required for vegetative growth, infection-related morphogenesis, and pathogenicity in the rice blast fungus Magnaporthe oryzae. Mol Plant Microbe Interact, 23(10), 1260-1274. Abstract.  Author URL. DOI.
Soanes DM, Talbot NJ (2010). Comparative genome analysis reveals an absence of leucine-rich repeat pattern-recognition receptor proteins in the kingdom Fungi. PLoS One, 5(9). Abstract.  Author URL. DOI.
Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, Stüber K, Ver Loren van Themaat E, Brown JKM, Butcher SA, Gurr SJ, et al (2010). Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science, 330(6010), 1543-1546. Abstract.  Author URL. DOI.

2009

Rispail N, Soanes DM, Ant C, Czajkowski R, Grünler A, Huguet R, Perez-Nadales E, Poli A, Sartorel E, Valiante V, et al (2009). Comparative genomics of MAP kinase and calcium-calcineurin signalling components in plant and human pathogenic fungi. Fungal Genet Biol, 46(4), 287-298. Abstract.  Author URL. DOI.
Richards TA, Soanes DM, Foster PG, Leonard G, Thornton CR, Talbot NJ (2009). Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi. The Plant Cell, 21, 1897-1911.
Richards T, Soanes DM, Foster PG, Leonard G, Talbot NJ (2009). The role of horizontal gene transfer in the evolution of trophic mechanisms across the eukaryotes.  Author URL. DOI.

2008

Soanes DM, Alam I, Cornell M, Wong HM, Hedeler C, Paton NW, Rattray M, Hubbard SJ, Oliver SG, Talbot NJ, et al (2008). Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis. PLoS One, 3(6). Abstract.  Author URL. DOI.
Soanes DM, Talbot NJ (2008). Moving targets: rapid evolution of oomycete effectors. Trends Microbiol, 16(11), 507-510. Abstract.  Author URL. DOI.

2007

Alam, I. Soanes, D.M. Wong, H.M. (2007). Comparative genome analysis across a kingdom of eukaryotic organisms: specialization and diversification of the fungi. Genome Research, 17, 1809-1822.
Wang Z-Y, Soanes DM, Kershaw MJ, Talbot NJ (2007). Functional analysis of lipid metabolism in Magnaporthe grisea reveals a requirement for peroxisomal fatty acid beta-oxidation during appressorium-mediated plant infection. Mol Plant Microbe Interact, 20(5), 475-491. Abstract.  Author URL. DOI.
Jenkinson JM, Wilson RA, Cartwright Z, Soanes DM, Kershaw MJ, Talbot NJ (2007). Functional genomics of plant infection by the rice blast fungus magnaporthe grisea. In  (Ed) Fungi in the Environment, 227-254.  Abstract. DOI.
Richards, T.A. Talbot, N.J. (2007). Insights from sequencing fungal and oomycete genomes: What can we learn about plant disease and the evolution of pathogenicity?. The Plant Cell, 19, 3318-3326.
Hedler C, Wong HM, Cornell MJ, Alam I, Soanes DM, Rattray M, Hubbard SJ, Talbot NJ, Oliver SG, Paton N, et al (2007). e-Fungi: a Data Resource for Comparative Analysis of Fungal Genomes. BMC Genomics, 8 Full text.

2006

Soanes DM, Talbot, N.J. (2006). Comparative genomic analysis of phytopathogenic fungi using expressed sequence tag (EST) collections. Molecular Plant Pathology, 7, 61-70.
Wang, Z.Y. Talbot, N.J. (2006). Peroxisomal carnitine acetyl transferase is required for elaboration of penetration hyphae during plant infection by Magnaporthe grisea. Molecular Microbiology, 61, 46-60.

2005

Soanes DM, Talbot NJ (2005). A bioinformatic tool for analysis of EST transcript abundance during infection-related development by Magnaporthe grisea. Mol Plant Pathol, 6(5), 503-512. Abstract.  Author URL. DOI.
Talbot, N.J. Ebbole, D.J. (2005). The genome sequence of the rice blast fungus Magnaporthe grisea. Nature, 434, 980-986.
Wang Z-Y, Jenkinson JM, Holcombe LJ, Soanes DM, Veneault-Fourrey C, Bhambra GK, Talbot NJ (2005). The molecular biology of appressorium turgor generation by the rice blast fungus Magnaporthe grisea. Biochem Soc Trans, 33(Pt 2), 384-388. Abstract.  Author URL. DOI.

2004

Soanes, D. Talbot, N.J. (2004). Functional Genomics of the rice blast fungus Magnaporthe grisea. In Elsevier BV (Ed) Fungal Genomics, Applied Mycology and Biotechnology Volume 4.

2003

Giles PF, Soanes DM, Talbot NJ (2003). A relational database for the discovery of genes encoding amino acid biosynthetic enzymes in pathogenic fungi. Comp Funct Genomics, 4(1), 4-15. Abstract.  Author URL. DOI.

2002

Soanes DM, Skinner W, Keon J, Hargreaves J, Talbot NJ (2002). Genomics of phytopathogenic fungi and the development of bioinformatic resources. Mol Plant Microbe Interact, 15(5), 421-427. Abstract.  Author URL. DOI.
Soanes DM, Kershaw MJ, Cooley RN, Talbot NJ (2002). Regulation of the MPG1 hydrophobin gene in the rice blast fungus Magnaporthe grisea. Mol Plant Microbe Interact, 15(12), 1253-1267. Abstract.  Author URL. DOI.