Comparative genomics

Dr David Studholme
Associate Professor in Bioinformatics

Key publications | Publications by category | Publications by year

Key publications



Sollars ESA, Harper AL, Kelly LJ, Sambles CM, Ramirez-Gonzalez RH, Swarbreck D, Kaithakottil G, Cooper ED, Uauy C, Havlickova L, et al (In Press). Genome sequence and genetic diversity of European ash trees. Nature, 541(7636), 212-216. Abstract.  Author URL.  Full text. DOI.
Taylor TB, Mulley G, Dills AH, Alsohim AS, McGuffin LJ, Studholme DJ, Silby MW, Brockhurst MA, Johnson LJ, Jackson RW, et al (2015). Evolution. Evolutionary resurrection of flagellar motility via rewiring of the nitrogen regulation system. Science, 347(6225), 1014-1017. Abstract.  Author URL.  Full text. DOI.
Raffaele S, Farrer RA, Cano LM, Studholme DJ, MacLean D, Thines M, Jiang RHY, Zody MC, Kunjeti SG, Donofrio NM, et al (2010). Genome evolution following host jumps in the Irish potato famine pathogen lineage. Science, 330(6010), 1540-1543. Abstract.  Author URL. DOI.
Mosher RA, Melnyk CW, Kelly KA, Dunn RM, Studholme DJ, Baulcombe DC (2009). Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis. Nature, 460(7252), 283-286. Abstract.  Author URL. DOI.
Molnár A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC (2007). miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature, 447(7148), 1126-1129. Abstract.  Author URL. DOI.

Publications by category


Journal articles

Devran Z, Kahveci E, Özkaynak E, Studholme DJ, Tör M (In Press). Development of molecular markers tightly linked to Pvr4 gene in pepper using next-generation sequencing. Mol Breed, 35(4). Abstract.  Author URL.  Full text. DOI.
Sollars ESA, Harper AL, Kelly LJ, Sambles CM, Ramirez-Gonzalez RH, Swarbreck D, Kaithakottil G, Cooper ED, Uauy C, Havlickova L, et al (In Press). Genome sequence and genetic diversity of European ash trees. Nature, 541(7636), 212-216. Abstract.  Author URL.  Full text. DOI.
Studholme DJ (In Press). Population-genomic insights into emergence, crop-adaptation, and dissemination of Pseudomonas syringae pathogens. Microbial Genomics Full text. DOI.
Turner J, O'Neill P, Grant M, Mumford RA, Thwaites R, Studholme DJ (2017). Genome sequences of 12 isolates of the EU1 lineage of Phytophthora ramorum , a fungus-like pathogen that causes extensive damage and mortality to a wide range of trees and other plants. Genomics Data, 12, 17-21. Full text. DOI.
Sambles C, Moore K, Lux TM, Jones K, Littlejohn GR, Gouveia JD, Aves SJ, Studholme DJ, Lee R, Love J, et al (2017). Metagenomic analysis of the complex microbial consortium associated with cultures of the oil-rich alga. Botryococcus braunii. MicrobiologyOpen, e00482-e00482. Full text. DOI.
Galhano R, Illana A, Ryder LS, Rodríguez-Romero J, Demuez M, Badaruddin M, Martinez-Rocha AL, Soanes DM, Studholme DJ, Talbot NJ, et al (2017). Tpc1 is an important Zn(II)2Cys6 transcriptional regulator required for polarized growth and virulence in the rice blast fungus. PLoS Pathog, 13(7). Abstract.  Author URL.  Full text. DOI.
Asif H, Studholme DJ, Khan A, Aurongzeb M, Khan IA, Azim MK (2016). Comparative genomics of an endophytic Pseudomonas putida isolated from mango orchard. Genet Mol Biol, 39(3), 465-473. Abstract.  Author URL.  Full text. DOI.
Harrison J, Dornbusch MR, Samac D, Studholme DJ (2016). Draft Genome Sequence of Pseudomonas syringae pv. syringae ALF3 Isolated from Alfalfa. Genome Announc, 4(1). Abstract.  Author URL.  Full text. DOI.
Jones KJ, Moore K, Sambles C, Love J, Studholme DJ, Aves SJ (2016). Draft Genome Sequences of Achromobacter piechaudii GCS2, Agrobacterium sp. Strain SUL3, Microbacterium sp. Strain GCS4, Shinella sp. Strain GWS1, and Shinella sp. Strain SUS2 Isolated from Consortium with the Hydrocarbon-Producing Alga Botryococcus braunii. Genome Announc, 4(1). Abstract.  Author URL.  Full text. DOI.
Harrison J, Grant MR, Studholme DJ (2016). Draft Genome Sequences of Two Strains of Xanthomonas arboricola pv. celebensis Isolated from Banana Plants. Genome Announc, 4(1). Abstract.  Author URL.  Full text. DOI.
Studholme DJ (2016). Genome Update. Let the consumer beware: Streptomyces genome sequence quality. Microbial Biotechnology, 9(1), 3-7. Abstract.  Full text. DOI.
Studholme DJ, McDougal RL, Sambles C, Hansen E, Hardy G, Grant M, Ganley RJ, Williams NM (2016). Genome sequences of six Phytophthora species associated with forests in New Zealand. Genomics Data, 7, 54-56. Abstract.  Full text. DOI.
Cairns TC, Studholme DJ, Talbot NJ, Haynes K (2016). New and Improved Techniques for the Study of Pathogenic Fungi. Trends in Microbiology, 24(1), 35-50. Abstract. DOI.
Cairns TC, Studholme DJ, Talbot NJ, Haynes K (2016). New and Improved Techniques for the Study of Pathogenic Fungi. Trends Microbiol, 24(1), 35-50. Abstract.  Author URL. DOI.
Kilaru S, Schuster M, Studholme D, Soanes D, Lin C, Talbot NJ, Steinberg G (2015). A codon-optimized green fluorescent protein for live cell imaging in Zymoseptoria tritici. Fungal Genet Biol, 79, 125-131. Abstract.  Author URL. DOI.
Laver T, Harrison J, O'Neill PA, Moore K, Farbos A, Paszkiewicz K, Studholme DJ (2015). Assessing the performance of the Oxford Nanopore Technologies MinION. Biomolecular Detection and Quantification, 3, 1-8. Abstract.  Full text. DOI.
Nandi T, Holden MTG, Didelot X, Mehershahi K, Boddey JA, Beacham I, Peak I, Harting J, Baybayan P, Guo Y, et al (2015). Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles. Genome Res, 25(1), 129-141. Abstract.  Author URL. DOI.
de Torres M, Littlejohn G, Jayaraman S, Studholme D, Bailey TC, Lawson T, Delfino L, Licht D, Truman W, Bölter B, et al (2015). Chloroplasts play a central role in plant defence and are targeted by pathogen effectors. Nature Plants, 1 Full text. DOI.
Cairns TC, Sidhu YS, Chaudhari YK, Talbot NJ, Studholme DJ, Haynes K (2015). Construction and high-throughput phenotypic screening ofZymoseptoria tritici over-expression strains. Fungal Genet Biol, 79, 110-117. Abstract.  Author URL. DOI.
Hodgetts J, Karamura G, Johnson G, Hall J, Perkins K, Beed F, Nakato V, Grant M, Studholme DJ, Boonham N, et al (2015). Development of a lateral flow device for in-field detection and evaluation of PCR-based diagnostic methods for Xanthomonas campestris pv. musacearum, the causal agent of banana xanthomonas wilt. Plant Pathology, 64(3), 559-567. Abstract. DOI.
Siddiqui FM, Ibrahim M, Noureen N, Noreen Z, Titball RW, Champion OL, Wren BW, Studholme D, Bokhari H (2015). Draft Genome Sequence of the Enteropathogenic Bacterium Campylobacter jejuni Strain cj255. Genome Announc, 3(5). Abstract.  Author URL.  Full text. DOI.
Sambles C, Schlenzig A, O'Neill P, Grant M, Studholme DJ (2015). Draft genome sequences of Phytophthora kernoviae and Phytophthora ramorum lineage EU2 from Scotland. Genomics Data, 6, 193-194. Full text. DOI.
Mata Saez LDL, McCracken AR, Cooke LR, O'Neill P, Grant M, Studholme DJ (2015). Draft genome sequences of seven isolates of Phytophthora ramorum EU2 from Northern Ireland. Genomics Data, 6, 191-192. Abstract.  Full text. DOI.
Taylor TB, Mulley G, Dills AH, Alsohim AS, McGuffin LJ, Studholme DJ, Silby MW, Brockhurst MA, Johnson LJ, Jackson RW, et al (2015). Evolution. Evolutionary resurrection of flagellar motility via rewiring of the nitrogen regulation system. Science, 347(6225), 1014-1017. Abstract.  Author URL.  Full text. DOI.
Sidhu YS, Cairns TC, Chaudhari YK, Usher J, Talbot NJ, Studholme DJ, Csukai M, Haynes K (2015). Exploitation of sulfonylurea resistance marker and non-homologous end joining mutants for functional analysis in Zymoseptoria tritici. Fungal Genet Biol, 79, 102-109. Abstract.  Author URL. DOI.
Sharma R, Xia X, Cano LM, Evangelisti E, Kemen E, Judelson H, Oome S, Sambles C, van den Hoogen DJ, Kitner M, et al (2015). Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora. BMC Genomics, 16 Abstract.  Author URL.  Full text. DOI.
Aritua V, Harrison J, Sapp M, Buruchara R, Smith J, Studholme DJ (2015). Genome sequencing reveals a new lineage associated with lablab bean and genetic exchange between Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans. Front Microbiol, 6 Abstract.  Author URL.  Full text. DOI.
Clarke CR, Studholme DJ, Hayes B, Runde B, Weisberg A, Cai R, Wroblewski T, Daunay M-C, Wicker E, Castillo JA, et al (2015). Genome-Enabled Phylogeographic Investigation of the Quarantine Pathogen Ralstonia solanacearum Race 3 Biovar 2 and Screening for Sources of Resistance Against its Core Effectors. Phytopathology, 105(5), 597-607. Abstract.  Author URL.  Full text. DOI.
Siddiqui F, Champion O, Akram M, Studholme D, Eqani SAMAS, Wren BW, Titball R, Bokhari H (2015). Molecular detection identified a type six secretion system in Campylobacter jejuni from various sources but not from human cases. J Appl Microbiol, 118(5), 1191-1198. Abstract.  Author URL. DOI.
Hodgetts J, Hall J, Karamura G, Grant M, Studholme DJ, Boonham N, Karamura E, Smith JJ (2015). Rapid, specific, simple, in-field detection of Xanthomonas campestris pathovar musacearum by loop-mediated isothermal amplification. J Appl Microbiol, 119(6), 1651-1658. Abstract.  Author URL. DOI.
Studholme DJ (2015). Some (bacilli) like it hot: Genomics of Geobacillus species. Microbial Biotechnology, 8(1), 40-48. Full text. DOI.
Aritua V, Musoni A, Kabeja A, Butare L, Mukamuhirwa F, Gahakwa D, Kato F, Abang MM, Buruchara R, Sapp M, et al (2015). The draft genome sequence of Xanthomonas species strain Nyagatare, isolated from diseased bean in Rwanda. FEMS Microbiol Lett, 362(4). Abstract.  Author URL.  Full text. DOI.
Harrison J, Moore K, Paszkiewicz K, Jones T, Grant M, Ambacheew D, Muzemil S, Studholme D (2014). A Draft Genome Sequence for Ensete ventricosum, the Drought-Tolerant “Tree Against Hunger”. Agronomy, 4, 13-33. Abstract. DOI.
O'Sullivan DM, Laver T, Temisak S, Redshaw N, Harris KA, Foy CA, Studholme DJ, Huggett JF (2014). Assessing the accuracy of quantitative molecular microbial profiling. Int J Mol Sci, 15(11), 21476-21491. Abstract.  Author URL.  Full text. DOI.
Wagley S, Newcombe J, Laing E, Yusuf E, Sambles CM, Studholme DJ, La Ragione RM, Titball RW, Champion OL (2014). Differences in carbon source utilisation distinguish Campylobacter jejuni from Campylobacter coli. BMC Microbiol, 14 Abstract.  Author URL.  Full text. DOI.
Uzelac G, Bertani I, Kojic M, Paszkiewicz KH, Studholme DJ, Passos da Silva D, Venturi V (2014). Draft Genome Sequence of Beneficial Rice Rhizosphere Isolate Pseudomonas aeruginosa PUPa3. Genome Announc, 2(4). Abstract.  Author URL.  Full text. DOI.
Harrison J, Studholme DJ (2014). Draft genome sequence of Xanthomonas axonopodis pathovar vasculorum NCPPB 900. FEMS Microbiology Letters, 360(2), 113-116. Abstract. DOI.
Wasukira A, Coulter M, Thwaites R, Al-Sowayeh N, Paszkiewicz K, Kubiriba J, Smith J, Grant M, Studholme D (2014). Genome Sequencing of Xanthomonas vasicola Pathovar vasculorum Reveals Variation in Plasmids and Genes Encoding Lipopolysaccharide Synthesis, Type-IV Pilus and Type-III Secretion Effectors. Pathogens, 3, 211-237. Abstract. DOI.
Harrison JW, Dung TTN, Siddiqui F, Korbrisate S, Bukhari H, Tra MPV, Hoang NVM, Carrique-Mas J, Bryant J, Campbell JI, et al (2014). Identification of possible virulence marker from Campylobacter jejuni isolates. Emerg Infect Dis, 20(6), 1026-1029. Abstract.  Author URL.  Full text. DOI.
Harrison J, Studholme DJ (2014). Recently published Streptomyces genome sequences. Microb Biotechnol, 7(5), 373-380. Author URL.  Full text. DOI.
Rhodes G, Bosma H, Studholme D, Arnold DL, Jackson RW, Pickup RW (2014). The rulB gene of plasmid pWW0 is a hotspot for the site-specific insertion of integron-like elements found in the chromosomes of environmental Pseudomonas fluorescens group bacteria. Environmental Microbiology, 16(8), 2374-2388. Abstract. DOI.
Huggett JF, Laver T, Tamisak S, Nixon G, O'Sullivan DM, Elaswarapu R, Studholme DJ, Foy CA (2013). Considerations for the development and application of control materials to improve metagenomic microbial community profiling. Accreditation and Quality Assurance, 18(2), 77-83. Abstract. DOI.
Passos da Silva D, Devescovi G, Paszkiewicz K, Moretti C, Buonaurio R, Studholme DJ, Venturi V (2013). Draft Genome Sequence of Erwinia toletana, a Bacterium Associated with Olive Knots Caused by Pseudomonas savastanoi pv. Savastanoi. Genome Announc, 1(3). Abstract.  Author URL.  Full text. DOI.
Khan A, Asif H, Studholme DJ, Khan IA, Azim MK (2013). Genome characterization of a novel Burkholderia cepacia complex genomovar isolated from dieback affected mango orchards. World J Microbiol Biotechnol, 29(11), 2033-2044. Abstract.  Author URL. DOI.
Quinn L, O'Neill PA, Harrison J, Paskiewicz KH, Mccracken AR, Cooke LR, Grant MR, Studholme DJ (2013). Genome-wide sequencing of Phytophthora lateralis reveals genetic variation among isolates from Lawson cypress (Chamaecyparis lawsoniana) in Northern Ireland. FEMS Microbiology Letters, 344(2), 179-185. Abstract. DOI.
Quinn L, O'Neill PA, Harrison J, Paskiewicz KH, McCracken AR, Cooke LR, Grant MR, Studholme DJ (2013). Genome-wide sequencing of Phytophthora lateralis reveals genetic variation among isolates from Lawson cypress (Chamaecyparis lawsoniana) in Northern Ireland. FEMS Microbiol Lett, 344(2), 179-185. Abstract.  Author URL. DOI.
Studholme D, Harris B, Le Cocq K, Winsbury R, Perera V, Ryder L, Beale M, Ward J, Thornton CR, Grant M, et al (2013). Investigating the Beneficial Traits of Trichoderma hamatum GD12 for Sustainable Agriculture - Insights from Genomics. Frontiers in Plant-Microbe Interactions, 4, 1-13. Abstract.  Full text. DOI.
Martinez-Argudo I, Veenendaal AKJ, Liu X, Roehrich AD, Ronessen MC, Franzoni G, van Rietschoten KN, Morimoto YV, Saijo-Hamano Y, Avison MB, et al (2013). Isolation of Salmonella mutants resistant to the inhibitory effect of Salicylidene acylhydrazides on flagella-mediated motility. PLoS One, 8(1). Abstract.  Author URL.  Full text. DOI.
Monteil CL, Cai R, Liu H, Llontop MEM, Leman S, Studholme DJ, Morris CE, Vinatzer BA (2013). Nonagricultural reservoirs contribute to emergence and evolution of Pseudomonas syringae crop pathogens. New Phytol, 199(3), 800-811. Abstract.  Author URL. DOI.
Huggett JF, Studholme DJ, Laver T, Foy CA (2013). Progress in metagenomics requires a balanced appraisal of the available technologies. European Journal of Clinical Microbiology and Infectious Diseases, 32(8), 1097-1098. DOI.
Huggett JF, Studholme DJ, Laver T, Foy CA (2013). Progress in metagenomics requires a balanced appraisal of the available technologies. Eur J Clin Microbiol Infect Dis, 32(8), 1097-1098. Author URL. DOI.
Burlinson P, Studholme D, Cambray-Young J, Heavens D, Rathjen J, Hodgkin J, Preston GM (2013). Pseudomonas fluorescens NZI7 repels grazing by C. elegans, a natural predator. ISME J, 7(6), 1126-1138. Abstract.  Author URL.  Full text. DOI.
Van Immerseel F, Studholme DJ, Eeckhaut V, Heyndrickx M, Dewulf J, Dewaele I, Van Hoorebeke S, Haesebrouck F, Van Meirhaeghe H, Ducatelle R, et al (2013). Salmonella Gallinarum field isolates from laying hens are related to the vaccine strain SG9R. Vaccine, 31(43), 4940-4945. Abstract.  Author URL. DOI.
Farrer RA, Henk DA, MacLean D, Studholme DJ, Fisher MC (2013). Using false discovery rates to benchmark SNP-callers in next-generation sequencing projects. Sci Rep, 3 Abstract.  Author URL.  Full text. DOI.
Azam S, Thakur V, Ruperao P, Shah T, Balaji J, Amindala B, Farmer AD, Studholme DJ, May GD, Edwards D, et al (2012). Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome. Am J Bot, 99(2), 186-192. Abstract.  Author URL. DOI.
Studholme DJ (2012). Deep sequencing of small RNAs in plants: applied bioinformatics. Brief Funct Genomics, 11(1), 71-85. Abstract.  Author URL. DOI.
Patel HK, da Silva DP, Devescovi G, Maraite H, Paszkiewicz K, Studholme DJ, Venturi V (2012). Draft genome sequence of Pseudomonas fuscovaginae, a broad-host-range pathogen of plants. J Bacteriol, 194(10), 2765-2766. Abstract.  Author URL.  Full text. DOI.
Sohn KH, Jones JDG, Studholme DJ (2012). Draft genome sequence of Pseudomonas syringae pathovar syringae strain FF5, causal agent of stem tip dieback disease on ornamental pear. J Bacteriol, 194(14), 3733-3734. Abstract.  Author URL.  Full text. DOI.
Wasukira A, Tayebwa J, Thwaites R, Paszkiewicz K, Aritua V, Kubiriba J, Smith J, Grant M, Studholme DJ (2012). Genome-wide sequencing reveals two major sub-lineages in the genetically monomorphic pathogen Xanthomonas campestris pathovar musacearum. Genes, 3(3), 361-377. Abstract.  Full text. DOI.
Mazzaglia A, Studholme DJ, Taratufolo MC, Cai R, Almeida NF, Goodman T, Guttman DS, Vinatzer BA, Balestra GM (2012). Pseudomonas syringae pv. actinidiae (PSA) isolates from recent bacterial canker of kiwifruit outbreaks belong to the same genetic lineage. PLoS One, 7(5). Abstract.  Author URL.  Full text. DOI.
Studholme DJ, Glover RH, Boonham N (2011). Application of high-throughput DNA sequencing in phytopathology. Annu Rev Phytopathol, 49, 87-105. Abstract.  Author URL. DOI.
Studholme DJ (2011). Application of high-throughput genome sequencing to intrapathovar variation in Pseudomonas syringae. Mol Plant Pathol, 12(8), 829-838. Abstract.  Author URL. DOI.
Studholme DJ, Wasukira A, Paszkiewicz K, Aritua V, Thwaites R, Smith J, Grant M (2011). Draft genome sequences of xanthomonas sacchari and two banana-associated xanthomonads reveal insights into the xanthomonas group 1 clade. Genes, 2(4), 1050-1065. Abstract.  Full text. DOI.
Kemen E, Gardiner A, Schultz-Larsen T, Kemen AC, Balmuth AL, Robert-Seilaniantz A, Bailey K, Holub E, Studholme DJ, Maclean D, et al (2011). Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana. PLoS Biol, 9(7). Abstract.  Author URL.  Full text. DOI.
Fabro G, Steinbrenner J, Coates M, Ishaque N, Baxter L, Studholme DJ, Körner E, Allen RL, Piquerez SJM, Rougon-Cardoso A, et al (2011). Multiple candidate effectors from the oomycete pathogen Hyaloperonospora arabidopsidis suppress host plant immunity. PLoS Pathog, 7(11). Abstract.  Author URL.  Full text. DOI.
Cai R, Lewis J, Yan S, Liu H, Clarke CR, Campanile F, Almeida NF, Studholme DJ, Lindeberg M, Schneider D, et al (2011). The plant pathogen Pseudomonas syringae pv. tomato is genetically monomorphic and under strong selection to evade tomato immunity. PLoS Pathog, 7(8). Abstract.  Author URL.  Full text. DOI.
MacLean D, Studholme DJ (2010). A Boolean model of the Pseudomonas syringae hrp regulon predicts a tightly regulated system. PLoS One, 5(2). Abstract.  Author URL.  Full text. DOI.
Green S, Studholme DJ, Laue BE, Dorati F, Lovell H, Arnold D, Cottrell JE, Bridgett S, Blaxter M, Huitema E, et al (2010). Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS One, 5(4). Abstract.  Author URL.  Full text. DOI.
Paszkiewicz K, Studholme DJ (2010). De novo assembly of short sequence reads. Brief Bioinform, 11(5), 457-472. Abstract.  Author URL. DOI.
MacLean D, Elina N, Havecker ER, Heimstaedt SB, Studholme DJ, Baulcombe DC (2010). Evidence for large complex networks of plant short silencing RNAs. PLoS One, 5(3). Abstract.  Author URL.  Full text. DOI.
MacLean D, Moulton V, Studholme DJ (2010). Finding sRNA generative locales from high-throughput sequencing data with NiBLS. BMC Bioinformatics, 11 Abstract.  Author URL.  Full text. DOI.
Raffaele S, Farrer RA, Cano LM, Studholme DJ, MacLean D, Thines M, Jiang RHY, Zody MC, Kunjeti SG, Donofrio NM, et al (2010). Genome evolution following host jumps in the Irish potato famine pathogen lineage. Science, 330(6010), 1540-1543. Abstract.  Author URL. DOI.
Studholme DJ, Kemen E, MacLean D, Schornack S, Aritua V, Thwaites R, Grant M, Smith J, Jones JDG (2010). Genome-wide sequencing data reveals virulence factors implicated in banana Xanthomonas wilt. FEMS Microbiol Lett, 310(2), 182-192. Abstract.  Author URL. DOI.
Nemri A, Atwell S, Tarone AM, Huang YS, Zhao K, Studholme DJ, Nordborg M, Jones JDG (2010). Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping. Proc Natl Acad Sci U S A, 107(22), 10302-10307. Abstract.  Author URL. DOI.
Clarke CR, Cai R, Studholme DJ, Guttman DS, Vinatzer BA (2010). Pseudomonas syringae strains naturally lacking the classical P. syringae hrp/hrc Locus are common leaf colonizers equipped with an atypical type III secretion system. Mol Plant Microbe Interact, 23(2), 198-210. Abstract.  Author URL. DOI.
Studholme DJ, Ibanez SG, MacLean D, Dangl JL, Chang JH, Rathjen JP (2009). A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528. BMC Genomics, 10 Abstract.  Author URL.  Full text. DOI.
Almeida NF, Yan S, Lindeberg M, Studholme DJ, Schneider DJ, Condon B, Liu H, Viana CJ, Warren A, Evans C, et al (2009). A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000. Mol Plant Microbe Interact, 22(1), 52-62. Abstract.  Author URL. DOI.
MacLean D, Jones JDG, Studholme DJ (2009). Application of 'next-generation' sequencing technologies to microbial genetics. NATURE REVIEWS MICROBIOLOGY, 7(4), 287-296. Author URL. DOI.
Farrer RA, Kemen E, Jones JDG, Studholme DJ (2009). De novo assembly of the Pseudomonas syringae pv. syringae B728a genome using Illumina/Solexa short sequence reads. FEMS Microbiol Lett, 291(1), 103-111. Abstract.  Author URL. DOI.
Haas BJ, Kamoun S, Zody MC, Jiang RHY, Handsaker RE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T, et al (2009). Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature, 461(7262), 393-398. Abstract.  Author URL. DOI.
Setubal JC, dos Santos P, Goldman BS, Ertesvåg H, Espin G, Rubio LM, Valla S, Almeida NF, Balasubramanian D, Cromes L, et al (2009). Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes. J Bacteriol, 191(14), 4534-4545. Abstract.  Author URL. DOI.
Jones AME, MacLean D, Studholme DJ, Serna-Sanz A, Andreasson E, Rathjen JP, Peck SC (2009). Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana. J Proteomics, 72(3), 439-451. Abstract.  Author URL. DOI.
Mosher RA, Melnyk CW, Kelly KA, Dunn RM, Studholme DJ, Baulcombe DC (2009). Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis. Nature, 460(7252), 283-286. Abstract.  Author URL. DOI.
Moxon S, Schwach F, Dalmay T, Maclean D, Studholme DJ, Moulton V (2008). A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics, 24(19), 2252-2253. Abstract.  Author URL. DOI.
Thompson AH, Studholme DJ, Green EM, Leak DJ (2008). Heterologous expression of pyruvate decarboxylase in Geobacillus thermoglucosidasius. Biotechnol Lett, 30(8), 1359-1365. Abstract.  Author URL. DOI.
MacLean D, Burrell MA, Studholme DJ, Jones AM (2008). PhosCalc: a tool for evaluating the sites of peptide phosphorylation from mass spectrometer data. BMC Res Notes, 1 Abstract.  Author URL.  Full text. DOI.
Mosher RA, Schwach F, Studholme D, Baulcombe DC (2008). PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis. Proc Natl Acad Sci U S A, 105(8), 3145-3150. Abstract.  Author URL.  Full text. DOI.
Bagnall A, Moxon S, Studholme D, Moulton V (2008). Time series data mining algorithms for identifying short RNA in Arabidopsis thaliana. Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology, BIOCOMP 2008, 182-188. Abstract.
Kamal N, Dorrell N, Jagannathan A, Turner SM, Constantinidou C, Studholme DJ, Marsden G, Hinds J, Laing KG, Wren BW, et al (2007). Deletion of a previously uncharacterized flagellar-hook-length control gene fliK modulates the sigma54-dependent regulon in Campylobacter jejuni. Microbiology, 153(Pt 9), 3099-3111. Abstract.  Author URL. DOI.
Jones J, Studholme DJ, Knight CG, Preston GM (2007). Integrated bioinformatic and phenotypic analysis of RpoN-dependent traits in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25. Environ Microbiol, 9(12), 3046-3064. Abstract.  Author URL. DOI.
Nemri A, Neff MM, Burrell M, Jones JDG, Studholme DJ (2007). Marker development for the genetic study of natural variation in Arabidopsis thaliana. Bioinformatics, 23(22), 3108-3109. Abstract.  Author URL. DOI.
Maor R, Jones A, Nühse TS, Studholme DJ, Peck SC, Shirasu K (2007). Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants. Mol Cell Proteomics, 6(4), 601-610. Abstract.  Author URL. DOI.
Hernandez-Pinzon I, Yelina NE, Schwach F, Studholme DJ, Baulcombe D, Dalmay T (2007). SDE5, the putative homologue of a human mRNA export factor, is required for transgene silencing and accumulation of trans-acting endogenous siRNA. Plant J, 50(1), 140-148. Abstract.  Author URL. DOI.
Molnár A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC (2007). miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature, 447(7148), 1126-1129. Abstract.  Author URL. DOI.
He Q-Y, Liu X-H, Li Q, Studholme DJ, Li X-W, Liang S-P (2006). G8: a novel domain associated with polycystic kidney disease and non-syndromic hearing loss. Bioinformatics, 22(18), 2189-2191. Abstract.  Author URL. DOI.
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, et al (2005). InterPro, progress and status in 2005. Nucleic Acids Res, 33(Database issue), D201-D205. Abstract.  Author URL.  Full text. DOI.
Fleck SC, Andreasson E, Merkouropolous G, Nuehse TS, Serna-Sanz A, Studholme D (2005). Phosphoproteomics in Arabidopsis from databases to signalling networks. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY, 141(3), S250-S250. Author URL.
Preston GM, Studholme DJ, Caldelari I (2005). Profiling the secretomes of plant pathogenic Proteobacteria. FEMS Microbiol Rev, 29(2), 331-360. Abstract.  Author URL. DOI.
Studholme DJ, Downie JA, Preston GM (2005). Protein domains and architectural innovation in plant-associated Proteobacteria. BMC Genomics, 6 Abstract.  Author URL.  Full text. DOI.
Guo JH, Huang Q, Studholme DJ, Wu CQ, Zhao Z (2005). Transcriptomic analyses support the similarity of gene expression between brain and testis in human as well as mouse. Cytogenet Genome Res, 111(2), 107-109. Abstract.  Author URL. DOI.
Studholme DJ, Bentley SD, Kormanec J (2004). Bioinformatic identification of novel regulatory DNA sequence motifs in Streptomyces coelicolor. BMC Microbiol, 4 Abstract.  Author URL.  Full text. DOI.
Tucker NP, D'Autréaux B, Studholme DJ, Spiro S, Dixon R (2004). DNA binding activity of the Escherichia coli nitric oxide sensor NorR suggests a conserved target sequence in diverse proteobacteria. J Bacteriol, 186(19), 6656-6660. Abstract.  Author URL. DOI.
Studholme DJ, Dixon R (2004). In silico analysis of the sigma54-dependent enhancer-binding proteins in Pirellula species strain 1. FEMS Microbiol Lett, 230(2), 215-225. Abstract.  Author URL.
Guo J, Chen S, Huang C, Chen L, Studholme DJ, Zhao S, Yu L (2004). MANSC: a seven-cysteine-containing domain present in animal membrane and extracellular proteins. Trends Biochem Sci, 29(4), 172-174. Author URL. DOI.
Liu XH, He QY, Studholme DJ, Wu Q, Liang SP, Yu L (2004). NCD3G: a novel nine-cysteine domain in family 3 GPCRs (vol 19, pg 458, 2004). TRENDS IN BIOCHEMICAL SCIENCES, 29(11), 571-571. Author URL. DOI.
Studholme DJ, Fuerst JA, Bateman A (2004). Novel protein domains and motifs in the marine planctomycete Rhodopirellula baltica. FEMS Microbiol Lett, 236(2), 333-340. Abstract.  Author URL. DOI.
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer ELL, et al (2004). The Pfam protein families database. Nucleic Acids Res, 32(Database issue), D138-D141. Abstract.  Author URL. DOI.
Studholme DJ, Pau RN (2003). A DNA element recognised by the molybdenum-responsive transcription factor ModE is conserved in Proteobacteria, green sulphur bacteria and Archaea. BMC Microbiol, 3 Abstract.  Author URL.  Full text. DOI.
Studholme DJ, Rawlings ND, Barrett AJ, Bateman A (2003). A comparison of Pfam and MEROPS: two databases, one comprehensive, and one specialised. BMC Bioinformatics, 4 Abstract.  Author URL.  Full text. DOI.
Studholme DJ, Dixon R (2003). Domain architectures of sigma54-dependent transcriptional activators. J Bacteriol, 185(6), 1757-1767. Author URL.
Studholme DJ (2002). Enhancer-dependent transcription in Salmonella enterica Typhimurium: new members of the sigmaN regulon inferred from protein sequence homology and predicted promoter sites. J Mol Microbiol Biotechnol, 4(4), 367-374. Abstract.  Author URL.
Elderkin S, Jones S, Schumacher J, Studholme D, Buck M (2002). Mechanism of action of the Escherichia coli phage shock protein PspA in repression of the AAA family transcription factor PspF. J Mol Biol, 320(1), 23-37. Abstract.  Author URL. DOI.
Studholme DJ, Wigneshwereraraj SR, Gallegos MT, Buck M (2000). Functionality of purified sigma(N) (sigma(54)) and a NifA-like protein from the hyperthermophile Aquifex aeolicus. J Bacteriol, 182(6), 1616-1623. Abstract.  Author URL.
Studholme DJ, Buck M, Nixon T (2000). Identification of potential sigma(N)-dependent promoters in bacterial genomes. Microbiology, 146 Pt 12, 3021-3023. Author URL. DOI.
Studholme DJ, Buck M (2000). Novel roles of sigmaN in small genomes. Microbiology, 146 ( Pt 1), 4-5. Author URL. DOI.
Studholme DJ, Buck M (2000). The alternative sigma factor sigma(28) of the extreme thermophile Aquifex aeolicus restores motility to an Escherichia coli fliA mutant. FEMS Microbiol Lett, 191(1), 103-107. Abstract.  Author URL.
Buck M, Gallegos MT, Studholme DJ, Guo Y, Gralla JD (2000). The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor. J Bacteriol, 182(15), 4129-4136. Author URL.
Studholme DJ, Buck M (2000). The biology of enhancer-dependent transcriptional regulation in bacteria: insights from genome sequences. FEMS Microbiol Lett, 186(1), 1-9. Abstract.  Author URL.
Studholme DJ, Jackson RA, Leak DJ (1999). Phylogenetic analysis of transformable strains of thermophilic Bacillus species. FEMS Microbiol Lett, 172(1), 85-90. Abstract.  Author URL.
Studholme DJ, Finn RD, Chaney MK, Buck M (1999). The C-terminal 12 amino acids of sigma(N) are required for structure and function. Arch Biochem Biophys, 371(2), 234-240. Abstract.  Author URL. DOI.

Chapters

Paszkiewicz K, Studholme DJ (2012). High-throughput sequencing data analysis software: Current state and future developments. In  (Ed) Bioinformatics for High Throughput Sequencing, 231-248.  Abstract. DOI.
MacLean D, Studholme DJ (2009). Bioinformatics Aspects of High-Throughput Sequencing Technology. In Jackson RW (Ed) Plant Pathogenic Bacteria: Genomics and Molecular Biology, Caister Academic Press.
Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bordoli L. Studholme DJ, Wu CH, et al (2004). InterPro -prediction of protein families, domains and functional sites. In Williams CR (Ed) Focus on Genome Research, New York: Nova Science Publishers Inc. 169-204.

Conferences

Samac D, Studholme DJ, Ao S (2014). Characterization of the bacterial stem blight pathogen of alfalfa, Pseudomonas syringae pv. syringae ALF3.  Author URL.

Publications by year



In Press

Devran Z, Kahveci E, Özkaynak E, Studholme DJ, Tör M (In Press). Development of molecular markers tightly linked to Pvr4 gene in pepper using next-generation sequencing. Mol Breed, 35(4). Abstract.  Author URL.  Full text. DOI.
Sollars ESA, Harper AL, Kelly LJ, Sambles CM, Ramirez-Gonzalez RH, Swarbreck D, Kaithakottil G, Cooper ED, Uauy C, Havlickova L, et al (In Press). Genome sequence and genetic diversity of European ash trees. Nature, 541(7636), 212-216. Abstract.  Author URL.  Full text. DOI.
Studholme DJ (In Press). Population-genomic insights into emergence, crop-adaptation, and dissemination of Pseudomonas syringae pathogens. Microbial Genomics Full text. DOI.

2017

Turner J, O'Neill P, Grant M, Mumford RA, Thwaites R, Studholme DJ (2017). Genome sequences of 12 isolates of the EU1 lineage of Phytophthora ramorum , a fungus-like pathogen that causes extensive damage and mortality to a wide range of trees and other plants. Genomics Data, 12, 17-21. Full text. DOI.
Sambles C, Moore K, Lux TM, Jones K, Littlejohn GR, Gouveia JD, Aves SJ, Studholme DJ, Lee R, Love J, et al (2017). Metagenomic analysis of the complex microbial consortium associated with cultures of the oil-rich alga. Botryococcus braunii. MicrobiologyOpen, e00482-e00482. Full text. DOI.
Galhano R, Illana A, Ryder LS, Rodríguez-Romero J, Demuez M, Badaruddin M, Martinez-Rocha AL, Soanes DM, Studholme DJ, Talbot NJ, et al (2017). Tpc1 is an important Zn(II)2Cys6 transcriptional regulator required for polarized growth and virulence in the rice blast fungus. PLoS Pathog, 13(7). Abstract.  Author URL.  Full text. DOI.

2016

Asif H, Studholme DJ, Khan A, Aurongzeb M, Khan IA, Azim MK (2016). Comparative genomics of an endophytic Pseudomonas putida isolated from mango orchard. Genet Mol Biol, 39(3), 465-473. Abstract.  Author URL.  Full text. DOI.
Harrison J, Dornbusch MR, Samac D, Studholme DJ (2016). Draft Genome Sequence of Pseudomonas syringae pv. syringae ALF3 Isolated from Alfalfa. Genome Announc, 4(1). Abstract.  Author URL.  Full text. DOI.
Jones KJ, Moore K, Sambles C, Love J, Studholme DJ, Aves SJ (2016). Draft Genome Sequences of Achromobacter piechaudii GCS2, Agrobacterium sp. Strain SUL3, Microbacterium sp. Strain GCS4, Shinella sp. Strain GWS1, and Shinella sp. Strain SUS2 Isolated from Consortium with the Hydrocarbon-Producing Alga Botryococcus braunii. Genome Announc, 4(1). Abstract.  Author URL.  Full text. DOI.
Harrison J, Grant MR, Studholme DJ (2016). Draft Genome Sequences of Two Strains of Xanthomonas arboricola pv. celebensis Isolated from Banana Plants. Genome Announc, 4(1). Abstract.  Author URL.  Full text. DOI.
Studholme DJ (2016). Genome Update. Let the consumer beware: Streptomyces genome sequence quality. Microbial Biotechnology, 9(1), 3-7. Abstract.  Full text. DOI.
Studholme DJ, McDougal RL, Sambles C, Hansen E, Hardy G, Grant M, Ganley RJ, Williams NM (2016). Genome sequences of six Phytophthora species associated with forests in New Zealand. Genomics Data, 7, 54-56. Abstract.  Full text. DOI.
Cairns TC, Studholme DJ, Talbot NJ, Haynes K (2016). New and Improved Techniques for the Study of Pathogenic Fungi. Trends in Microbiology, 24(1), 35-50. Abstract. DOI.
Cairns TC, Studholme DJ, Talbot NJ, Haynes K (2016). New and Improved Techniques for the Study of Pathogenic Fungi. Trends Microbiol, 24(1), 35-50. Abstract.  Author URL. DOI.

2015

Kilaru S, Schuster M, Studholme D, Soanes D, Lin C, Talbot NJ, Steinberg G (2015). A codon-optimized green fluorescent protein for live cell imaging in Zymoseptoria tritici. Fungal Genet Biol, 79, 125-131. Abstract.  Author URL. DOI.
Laver T, Harrison J, O'Neill PA, Moore K, Farbos A, Paszkiewicz K, Studholme DJ (2015). Assessing the performance of the Oxford Nanopore Technologies MinION. Biomolecular Detection and Quantification, 3, 1-8. Abstract.  Full text. DOI.
Nandi T, Holden MTG, Didelot X, Mehershahi K, Boddey JA, Beacham I, Peak I, Harting J, Baybayan P, Guo Y, et al (2015). Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles. Genome Res, 25(1), 129-141. Abstract.  Author URL. DOI.
de Torres M, Littlejohn G, Jayaraman S, Studholme D, Bailey TC, Lawson T, Delfino L, Licht D, Truman W, Bölter B, et al (2015). Chloroplasts play a central role in plant defence and are targeted by pathogen effectors. Nature Plants, 1 Full text. DOI.
Cairns TC, Sidhu YS, Chaudhari YK, Talbot NJ, Studholme DJ, Haynes K (2015). Construction and high-throughput phenotypic screening ofZymoseptoria tritici over-expression strains. Fungal Genet Biol, 79, 110-117. Abstract.  Author URL. DOI.
Hodgetts J, Karamura G, Johnson G, Hall J, Perkins K, Beed F, Nakato V, Grant M, Studholme DJ, Boonham N, et al (2015). Development of a lateral flow device for in-field detection and evaluation of PCR-based diagnostic methods for Xanthomonas campestris pv. musacearum, the causal agent of banana xanthomonas wilt. Plant Pathology, 64(3), 559-567. Abstract. DOI.
Siddiqui FM, Ibrahim M, Noureen N, Noreen Z, Titball RW, Champion OL, Wren BW, Studholme D, Bokhari H (2015). Draft Genome Sequence of the Enteropathogenic Bacterium Campylobacter jejuni Strain cj255. Genome Announc, 3(5). Abstract.  Author URL.  Full text. DOI.
Sambles C, Schlenzig A, O'Neill P, Grant M, Studholme DJ (2015). Draft genome sequences of Phytophthora kernoviae and Phytophthora ramorum lineage EU2 from Scotland. Genomics Data, 6, 193-194. Full text. DOI.
Mata Saez LDL, McCracken AR, Cooke LR, O'Neill P, Grant M, Studholme DJ (2015). Draft genome sequences of seven isolates of Phytophthora ramorum EU2 from Northern Ireland. Genomics Data, 6, 191-192. Abstract.  Full text. DOI.
Taylor TB, Mulley G, Dills AH, Alsohim AS, McGuffin LJ, Studholme DJ, Silby MW, Brockhurst MA, Johnson LJ, Jackson RW, et al (2015). Evolution. Evolutionary resurrection of flagellar motility via rewiring of the nitrogen regulation system. Science, 347(6225), 1014-1017. Abstract.  Author URL.  Full text. DOI.
Sidhu YS, Cairns TC, Chaudhari YK, Usher J, Talbot NJ, Studholme DJ, Csukai M, Haynes K (2015). Exploitation of sulfonylurea resistance marker and non-homologous end joining mutants for functional analysis in Zymoseptoria tritici. Fungal Genet Biol, 79, 102-109. Abstract.  Author URL. DOI.
Sharma R, Xia X, Cano LM, Evangelisti E, Kemen E, Judelson H, Oome S, Sambles C, van den Hoogen DJ, Kitner M, et al (2015). Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora. BMC Genomics, 16 Abstract.  Author URL.  Full text. DOI.
Aritua V, Harrison J, Sapp M, Buruchara R, Smith J, Studholme DJ (2015). Genome sequencing reveals a new lineage associated with lablab bean and genetic exchange between Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans. Front Microbiol, 6 Abstract.  Author URL.  Full text. DOI.
Clarke CR, Studholme DJ, Hayes B, Runde B, Weisberg A, Cai R, Wroblewski T, Daunay M-C, Wicker E, Castillo JA, et al (2015). Genome-Enabled Phylogeographic Investigation of the Quarantine Pathogen Ralstonia solanacearum Race 3 Biovar 2 and Screening for Sources of Resistance Against its Core Effectors. Phytopathology, 105(5), 597-607. Abstract.  Author URL.  Full text. DOI.
Siddiqui F, Champion O, Akram M, Studholme D, Eqani SAMAS, Wren BW, Titball R, Bokhari H (2015). Molecular detection identified a type six secretion system in Campylobacter jejuni from various sources but not from human cases. J Appl Microbiol, 118(5), 1191-1198. Abstract.  Author URL. DOI.
Hodgetts J, Hall J, Karamura G, Grant M, Studholme DJ, Boonham N, Karamura E, Smith JJ (2015). Rapid, specific, simple, in-field detection of Xanthomonas campestris pathovar musacearum by loop-mediated isothermal amplification. J Appl Microbiol, 119(6), 1651-1658. Abstract.  Author URL. DOI.
Studholme DJ (2015). Some (bacilli) like it hot: Genomics of Geobacillus species. Microbial Biotechnology, 8(1), 40-48. Full text. DOI.
Aritua V, Musoni A, Kabeja A, Butare L, Mukamuhirwa F, Gahakwa D, Kato F, Abang MM, Buruchara R, Sapp M, et al (2015). The draft genome sequence of Xanthomonas species strain Nyagatare, isolated from diseased bean in Rwanda. FEMS Microbiol Lett, 362(4). Abstract.  Author URL.  Full text. DOI.

2014

Harrison J, Moore K, Paszkiewicz K, Jones T, Grant M, Ambacheew D, Muzemil S, Studholme D (2014). A Draft Genome Sequence for Ensete ventricosum, the Drought-Tolerant “Tree Against Hunger”. Agronomy, 4, 13-33. Abstract. DOI.
O'Sullivan DM, Laver T, Temisak S, Redshaw N, Harris KA, Foy CA, Studholme DJ, Huggett JF (2014). Assessing the accuracy of quantitative molecular microbial profiling. Int J Mol Sci, 15(11), 21476-21491. Abstract.  Author URL.  Full text. DOI.
Samac D, Studholme DJ, Ao S (2014). Characterization of the bacterial stem blight pathogen of alfalfa, Pseudomonas syringae pv. syringae ALF3.  Author URL.
Wagley S, Newcombe J, Laing E, Yusuf E, Sambles CM, Studholme DJ, La Ragione RM, Titball RW, Champion OL (2014). Differences in carbon source utilisation distinguish Campylobacter jejuni from Campylobacter coli. BMC Microbiol, 14 Abstract.  Author URL.  Full text. DOI.
Uzelac G, Bertani I, Kojic M, Paszkiewicz KH, Studholme DJ, Passos da Silva D, Venturi V (2014). Draft Genome Sequence of Beneficial Rice Rhizosphere Isolate Pseudomonas aeruginosa PUPa3. Genome Announc, 2(4). Abstract.  Author URL.  Full text. DOI.
Harrison J, Studholme DJ (2014). Draft genome sequence of Xanthomonas axonopodis pathovar vasculorum NCPPB 900. FEMS Microbiology Letters, 360(2), 113-116. Abstract. DOI.
Wasukira A, Coulter M, Thwaites R, Al-Sowayeh N, Paszkiewicz K, Kubiriba J, Smith J, Grant M, Studholme D (2014). Genome Sequencing of Xanthomonas vasicola Pathovar vasculorum Reveals Variation in Plasmids and Genes Encoding Lipopolysaccharide Synthesis, Type-IV Pilus and Type-III Secretion Effectors. Pathogens, 3, 211-237. Abstract. DOI.
Harrison JW, Dung TTN, Siddiqui F, Korbrisate S, Bukhari H, Tra MPV, Hoang NVM, Carrique-Mas J, Bryant J, Campbell JI, et al (2014). Identification of possible virulence marker from Campylobacter jejuni isolates. Emerg Infect Dis, 20(6), 1026-1029. Abstract.  Author URL.  Full text. DOI.
Harrison J, Studholme DJ (2014). Recently published Streptomyces genome sequences. Microb Biotechnol, 7(5), 373-380. Author URL.  Full text. DOI.
Rhodes G, Bosma H, Studholme D, Arnold DL, Jackson RW, Pickup RW (2014). The rulB gene of plasmid pWW0 is a hotspot for the site-specific insertion of integron-like elements found in the chromosomes of environmental Pseudomonas fluorescens group bacteria. Environmental Microbiology, 16(8), 2374-2388. Abstract. DOI.

2013

Huggett JF, Laver T, Tamisak S, Nixon G, O'Sullivan DM, Elaswarapu R, Studholme DJ, Foy CA (2013). Considerations for the development and application of control materials to improve metagenomic microbial community profiling. Accreditation and Quality Assurance, 18(2), 77-83. Abstract. DOI.
Passos da Silva D, Devescovi G, Paszkiewicz K, Moretti C, Buonaurio R, Studholme DJ, Venturi V (2013). Draft Genome Sequence of Erwinia toletana, a Bacterium Associated with Olive Knots Caused by Pseudomonas savastanoi pv. Savastanoi. Genome Announc, 1(3). Abstract.  Author URL.  Full text. DOI.
Khan A, Asif H, Studholme DJ, Khan IA, Azim MK (2013). Genome characterization of a novel Burkholderia cepacia complex genomovar isolated from dieback affected mango orchards. World J Microbiol Biotechnol, 29(11), 2033-2044. Abstract.  Author URL. DOI.
Quinn L, O'Neill PA, Harrison J, Paskiewicz KH, Mccracken AR, Cooke LR, Grant MR, Studholme DJ (2013). Genome-wide sequencing of Phytophthora lateralis reveals genetic variation among isolates from Lawson cypress (Chamaecyparis lawsoniana) in Northern Ireland. FEMS Microbiology Letters, 344(2), 179-185. Abstract. DOI.
Quinn L, O'Neill PA, Harrison J, Paskiewicz KH, McCracken AR, Cooke LR, Grant MR, Studholme DJ (2013). Genome-wide sequencing of Phytophthora lateralis reveals genetic variation among isolates from Lawson cypress (Chamaecyparis lawsoniana) in Northern Ireland. FEMS Microbiol Lett, 344(2), 179-185. Abstract.  Author URL. DOI.
Studholme D, Harris B, Le Cocq K, Winsbury R, Perera V, Ryder L, Beale M, Ward J, Thornton CR, Grant M, et al (2013). Investigating the Beneficial Traits of Trichoderma hamatum GD12 for Sustainable Agriculture - Insights from Genomics. Frontiers in Plant-Microbe Interactions, 4, 1-13. Abstract.  Full text. DOI.
Martinez-Argudo I, Veenendaal AKJ, Liu X, Roehrich AD, Ronessen MC, Franzoni G, van Rietschoten KN, Morimoto YV, Saijo-Hamano Y, Avison MB, et al (2013). Isolation of Salmonella mutants resistant to the inhibitory effect of Salicylidene acylhydrazides on flagella-mediated motility. PLoS One, 8(1). Abstract.  Author URL.  Full text. DOI.
Monteil CL, Cai R, Liu H, Llontop MEM, Leman S, Studholme DJ, Morris CE, Vinatzer BA (2013). Nonagricultural reservoirs contribute to emergence and evolution of Pseudomonas syringae crop pathogens. New Phytol, 199(3), 800-811. Abstract.  Author URL. DOI.
Huggett JF, Studholme DJ, Laver T, Foy CA (2013). Progress in metagenomics requires a balanced appraisal of the available technologies. European Journal of Clinical Microbiology and Infectious Diseases, 32(8), 1097-1098. DOI.
Huggett JF, Studholme DJ, Laver T, Foy CA (2013). Progress in metagenomics requires a balanced appraisal of the available technologies. Eur J Clin Microbiol Infect Dis, 32(8), 1097-1098. Author URL. DOI.
Burlinson P, Studholme D, Cambray-Young J, Heavens D, Rathjen J, Hodgkin J, Preston GM (2013). Pseudomonas fluorescens NZI7 repels grazing by C. elegans, a natural predator. ISME J, 7(6), 1126-1138. Abstract.  Author URL.  Full text. DOI.
Van Immerseel F, Studholme DJ, Eeckhaut V, Heyndrickx M, Dewulf J, Dewaele I, Van Hoorebeke S, Haesebrouck F, Van Meirhaeghe H, Ducatelle R, et al (2013). Salmonella Gallinarum field isolates from laying hens are related to the vaccine strain SG9R. Vaccine, 31(43), 4940-4945. Abstract.  Author URL. DOI.
Farrer RA, Henk DA, MacLean D, Studholme DJ, Fisher MC (2013). Using false discovery rates to benchmark SNP-callers in next-generation sequencing projects. Sci Rep, 3 Abstract.  Author URL.  Full text. DOI.

2012

Azam S, Thakur V, Ruperao P, Shah T, Balaji J, Amindala B, Farmer AD, Studholme DJ, May GD, Edwards D, et al (2012). Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome. Am J Bot, 99(2), 186-192. Abstract.  Author URL. DOI.
Studholme DJ (2012). Deep sequencing of small RNAs in plants: applied bioinformatics. Brief Funct Genomics, 11(1), 71-85. Abstract.  Author URL. DOI.
Patel HK, da Silva DP, Devescovi G, Maraite H, Paszkiewicz K, Studholme DJ, Venturi V (2012). Draft genome sequence of Pseudomonas fuscovaginae, a broad-host-range pathogen of plants. J Bacteriol, 194(10), 2765-2766. Abstract.  Author URL.  Full text. DOI.
Sohn KH, Jones JDG, Studholme DJ (2012). Draft genome sequence of Pseudomonas syringae pathovar syringae strain FF5, causal agent of stem tip dieback disease on ornamental pear. J Bacteriol, 194(14), 3733-3734. Abstract.  Author URL.  Full text. DOI.
Wasukira A, Tayebwa J, Thwaites R, Paszkiewicz K, Aritua V, Kubiriba J, Smith J, Grant M, Studholme DJ (2012). Genome-wide sequencing reveals two major sub-lineages in the genetically monomorphic pathogen Xanthomonas campestris pathovar musacearum. Genes, 3(3), 361-377. Abstract.  Full text. DOI.
Paszkiewicz K, Studholme DJ (2012). High-throughput sequencing data analysis software: Current state and future developments. In  (Ed) Bioinformatics for High Throughput Sequencing, 231-248.  Abstract. DOI.
Mazzaglia A, Studholme DJ, Taratufolo MC, Cai R, Almeida NF, Goodman T, Guttman DS, Vinatzer BA, Balestra GM (2012). Pseudomonas syringae pv. actinidiae (PSA) isolates from recent bacterial canker of kiwifruit outbreaks belong to the same genetic lineage. PLoS One, 7(5). Abstract.  Author URL.  Full text. DOI.

2011

Studholme DJ, Glover RH, Boonham N (2011). Application of high-throughput DNA sequencing in phytopathology. Annu Rev Phytopathol, 49, 87-105. Abstract.  Author URL. DOI.
Studholme DJ (2011). Application of high-throughput genome sequencing to intrapathovar variation in Pseudomonas syringae. Mol Plant Pathol, 12(8), 829-838. Abstract.  Author URL. DOI.
Studholme DJ, Wasukira A, Paszkiewicz K, Aritua V, Thwaites R, Smith J, Grant M (2011). Draft genome sequences of xanthomonas sacchari and two banana-associated xanthomonads reveal insights into the xanthomonas group 1 clade. Genes, 2(4), 1050-1065. Abstract.  Full text. DOI.
Kemen E, Gardiner A, Schultz-Larsen T, Kemen AC, Balmuth AL, Robert-Seilaniantz A, Bailey K, Holub E, Studholme DJ, Maclean D, et al (2011). Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana. PLoS Biol, 9(7). Abstract.  Author URL.  Full text. DOI.
Fabro G, Steinbrenner J, Coates M, Ishaque N, Baxter L, Studholme DJ, Körner E, Allen RL, Piquerez SJM, Rougon-Cardoso A, et al (2011). Multiple candidate effectors from the oomycete pathogen Hyaloperonospora arabidopsidis suppress host plant immunity. PLoS Pathog, 7(11). Abstract.  Author URL.  Full text. DOI.
Cai R, Lewis J, Yan S, Liu H, Clarke CR, Campanile F, Almeida NF, Studholme DJ, Lindeberg M, Schneider D, et al (2011). The plant pathogen Pseudomonas syringae pv. tomato is genetically monomorphic and under strong selection to evade tomato immunity. PLoS Pathog, 7(8). Abstract.  Author URL.  Full text. DOI.

2010

MacLean D, Studholme DJ (2010). A Boolean model of the Pseudomonas syringae hrp regulon predicts a tightly regulated system. PLoS One, 5(2). Abstract.  Author URL.  Full text. DOI.
Green S, Studholme DJ, Laue BE, Dorati F, Lovell H, Arnold D, Cottrell JE, Bridgett S, Blaxter M, Huitema E, et al (2010). Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS One, 5(4). Abstract.  Author URL.  Full text. DOI.
Paszkiewicz K, Studholme DJ (2010). De novo assembly of short sequence reads. Brief Bioinform, 11(5), 457-472. Abstract.  Author URL. DOI.
MacLean D, Elina N, Havecker ER, Heimstaedt SB, Studholme DJ, Baulcombe DC (2010). Evidence for large complex networks of plant short silencing RNAs. PLoS One, 5(3). Abstract.  Author URL.  Full text. DOI.
MacLean D, Moulton V, Studholme DJ (2010). Finding sRNA generative locales from high-throughput sequencing data with NiBLS. BMC Bioinformatics, 11 Abstract.  Author URL.  Full text. DOI.
Raffaele S, Farrer RA, Cano LM, Studholme DJ, MacLean D, Thines M, Jiang RHY, Zody MC, Kunjeti SG, Donofrio NM, et al (2010). Genome evolution following host jumps in the Irish potato famine pathogen lineage. Science, 330(6010), 1540-1543. Abstract.  Author URL. DOI.
Studholme DJ, Kemen E, MacLean D, Schornack S, Aritua V, Thwaites R, Grant M, Smith J, Jones JDG (2010). Genome-wide sequencing data reveals virulence factors implicated in banana Xanthomonas wilt. FEMS Microbiol Lett, 310(2), 182-192. Abstract.  Author URL. DOI.
Nemri A, Atwell S, Tarone AM, Huang YS, Zhao K, Studholme DJ, Nordborg M, Jones JDG (2010). Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping. Proc Natl Acad Sci U S A, 107(22), 10302-10307. Abstract.  Author URL. DOI.
Clarke CR, Cai R, Studholme DJ, Guttman DS, Vinatzer BA (2010). Pseudomonas syringae strains naturally lacking the classical P. syringae hrp/hrc Locus are common leaf colonizers equipped with an atypical type III secretion system. Mol Plant Microbe Interact, 23(2), 198-210. Abstract.  Author URL. DOI.

2009

Studholme DJ, Ibanez SG, MacLean D, Dangl JL, Chang JH, Rathjen JP (2009). A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528. BMC Genomics, 10 Abstract.  Author URL.  Full text. DOI.
Almeida NF, Yan S, Lindeberg M, Studholme DJ, Schneider DJ, Condon B, Liu H, Viana CJ, Warren A, Evans C, et al (2009). A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000. Mol Plant Microbe Interact, 22(1), 52-62. Abstract.  Author URL. DOI.
MacLean D, Jones JDG, Studholme DJ (2009). Application of 'next-generation' sequencing technologies to microbial genetics. NATURE REVIEWS MICROBIOLOGY, 7(4), 287-296. Author URL. DOI.
MacLean D, Studholme DJ (2009). Bioinformatics Aspects of High-Throughput Sequencing Technology. In Jackson RW (Ed) Plant Pathogenic Bacteria: Genomics and Molecular Biology, Caister Academic Press.
Farrer RA, Kemen E, Jones JDG, Studholme DJ (2009). De novo assembly of the Pseudomonas syringae pv. syringae B728a genome using Illumina/Solexa short sequence reads. FEMS Microbiol Lett, 291(1), 103-111. Abstract.  Author URL. DOI.
Haas BJ, Kamoun S, Zody MC, Jiang RHY, Handsaker RE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T, et al (2009). Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature, 461(7262), 393-398. Abstract.  Author URL. DOI.
Setubal JC, dos Santos P, Goldman BS, Ertesvåg H, Espin G, Rubio LM, Valla S, Almeida NF, Balasubramanian D, Cromes L, et al (2009). Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes. J Bacteriol, 191(14), 4534-4545. Abstract.  Author URL. DOI.
Jones AME, MacLean D, Studholme DJ, Serna-Sanz A, Andreasson E, Rathjen JP, Peck SC (2009). Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana. J Proteomics, 72(3), 439-451. Abstract.  Author URL. DOI.
Mosher RA, Melnyk CW, Kelly KA, Dunn RM, Studholme DJ, Baulcombe DC (2009). Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis. Nature, 460(7252), 283-286. Abstract.  Author URL. DOI.

2008

Moxon S, Schwach F, Dalmay T, Maclean D, Studholme DJ, Moulton V (2008). A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics, 24(19), 2252-2253. Abstract.  Author URL. DOI.
Thompson AH, Studholme DJ, Green EM, Leak DJ (2008). Heterologous expression of pyruvate decarboxylase in Geobacillus thermoglucosidasius. Biotechnol Lett, 30(8), 1359-1365. Abstract.  Author URL. DOI.
MacLean D, Burrell MA, Studholme DJ, Jones AM (2008). PhosCalc: a tool for evaluating the sites of peptide phosphorylation from mass spectrometer data. BMC Res Notes, 1 Abstract.  Author URL.  Full text. DOI.
Mosher RA, Schwach F, Studholme D, Baulcombe DC (2008). PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis. Proc Natl Acad Sci U S A, 105(8), 3145-3150. Abstract.  Author URL.  Full text. DOI.
Bagnall A, Moxon S, Studholme D, Moulton V (2008). Time series data mining algorithms for identifying short RNA in Arabidopsis thaliana. Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology, BIOCOMP 2008, 182-188. Abstract.

2007

Kamal N, Dorrell N, Jagannathan A, Turner SM, Constantinidou C, Studholme DJ, Marsden G, Hinds J, Laing KG, Wren BW, et al (2007). Deletion of a previously uncharacterized flagellar-hook-length control gene fliK modulates the sigma54-dependent regulon in Campylobacter jejuni. Microbiology, 153(Pt 9), 3099-3111. Abstract.  Author URL. DOI.
Jones J, Studholme DJ, Knight CG, Preston GM (2007). Integrated bioinformatic and phenotypic analysis of RpoN-dependent traits in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25. Environ Microbiol, 9(12), 3046-3064. Abstract.  Author URL. DOI.
Nemri A, Neff MM, Burrell M, Jones JDG, Studholme DJ (2007). Marker development for the genetic study of natural variation in Arabidopsis thaliana. Bioinformatics, 23(22), 3108-3109. Abstract.  Author URL. DOI.
Maor R, Jones A, Nühse TS, Studholme DJ, Peck SC, Shirasu K (2007). Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants. Mol Cell Proteomics, 6(4), 601-610. Abstract.  Author URL. DOI.
Hernandez-Pinzon I, Yelina NE, Schwach F, Studholme DJ, Baulcombe D, Dalmay T (2007). SDE5, the putative homologue of a human mRNA export factor, is required for transgene silencing and accumulation of trans-acting endogenous siRNA. Plant J, 50(1), 140-148. Abstract.  Author URL. DOI.
Molnár A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC (2007). miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature, 447(7148), 1126-1129. Abstract.  Author URL. DOI.

2006

He Q-Y, Liu X-H, Li Q, Studholme DJ, Li X-W, Liang S-P (2006). G8: a novel domain associated with polycystic kidney disease and non-syndromic hearing loss. Bioinformatics, 22(18), 2189-2191. Abstract.  Author URL. DOI.

2005

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, et al (2005). InterPro, progress and status in 2005. Nucleic Acids Res, 33(Database issue), D201-D205. Abstract.  Author URL.  Full text. DOI.
Fleck SC, Andreasson E, Merkouropolous G, Nuehse TS, Serna-Sanz A, Studholme D (2005). Phosphoproteomics in Arabidopsis from databases to signalling networks. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY, 141(3), S250-S250. Author URL.
Preston GM, Studholme DJ, Caldelari I (2005). Profiling the secretomes of plant pathogenic Proteobacteria. FEMS Microbiol Rev, 29(2), 331-360. Abstract.  Author URL. DOI.
Studholme DJ, Downie JA, Preston GM (2005). Protein domains and architectural innovation in plant-associated Proteobacteria. BMC Genomics, 6 Abstract.  Author URL.  Full text. DOI.
Guo JH, Huang Q, Studholme DJ, Wu CQ, Zhao Z (2005). Transcriptomic analyses support the similarity of gene expression between brain and testis in human as well as mouse. Cytogenet Genome Res, 111(2), 107-109. Abstract.  Author URL. DOI.

2004

Studholme DJ, Bentley SD, Kormanec J (2004). Bioinformatic identification of novel regulatory DNA sequence motifs in Streptomyces coelicolor. BMC Microbiol, 4 Abstract.  Author URL.  Full text. DOI.
Tucker NP, D'Autréaux B, Studholme DJ, Spiro S, Dixon R (2004). DNA binding activity of the Escherichia coli nitric oxide sensor NorR suggests a conserved target sequence in diverse proteobacteria. J Bacteriol, 186(19), 6656-6660. Abstract.  Author URL. DOI.
Studholme DJ, Dixon R (2004). In silico analysis of the sigma54-dependent enhancer-binding proteins in Pirellula species strain 1. FEMS Microbiol Lett, 230(2), 215-225. Abstract.  Author URL.
Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bordoli L. Studholme DJ, Wu CH, et al (2004). InterPro -prediction of protein families, domains and functional sites. In Williams CR (Ed) Focus on Genome Research, New York: Nova Science Publishers Inc. 169-204.
Guo J, Chen S, Huang C, Chen L, Studholme DJ, Zhao S, Yu L (2004). MANSC: a seven-cysteine-containing domain present in animal membrane and extracellular proteins. Trends Biochem Sci, 29(4), 172-174. Author URL. DOI.
Liu XH, He QY, Studholme DJ, Wu Q, Liang SP, Yu L (2004). NCD3G: a novel nine-cysteine domain in family 3 GPCRs (vol 19, pg 458, 2004). TRENDS IN BIOCHEMICAL SCIENCES, 29(11), 571-571. Author URL. DOI.
Studholme DJ, Fuerst JA, Bateman A (2004). Novel protein domains and motifs in the marine planctomycete Rhodopirellula baltica. FEMS Microbiol Lett, 236(2), 333-340. Abstract.  Author URL. DOI.
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer ELL, et al (2004). The Pfam protein families database. Nucleic Acids Res, 32(Database issue), D138-D141. Abstract.  Author URL. DOI.

2003

Studholme DJ, Pau RN (2003). A DNA element recognised by the molybdenum-responsive transcription factor ModE is conserved in Proteobacteria, green sulphur bacteria and Archaea. BMC Microbiol, 3 Abstract.  Author URL.  Full text. DOI.
Studholme DJ, Rawlings ND, Barrett AJ, Bateman A (2003). A comparison of Pfam and MEROPS: two databases, one comprehensive, and one specialised. BMC Bioinformatics, 4 Abstract.  Author URL.  Full text. DOI.
Studholme DJ, Dixon R (2003). Domain architectures of sigma54-dependent transcriptional activators. J Bacteriol, 185(6), 1757-1767. Author URL.

2002

Studholme DJ (2002). Enhancer-dependent transcription in Salmonella enterica Typhimurium: new members of the sigmaN regulon inferred from protein sequence homology and predicted promoter sites. J Mol Microbiol Biotechnol, 4(4), 367-374. Abstract.  Author URL.
Elderkin S, Jones S, Schumacher J, Studholme D, Buck M (2002). Mechanism of action of the Escherichia coli phage shock protein PspA in repression of the AAA family transcription factor PspF. J Mol Biol, 320(1), 23-37. Abstract.  Author URL. DOI.

2000

Studholme DJ, Wigneshwereraraj SR, Gallegos MT, Buck M (2000). Functionality of purified sigma(N) (sigma(54)) and a NifA-like protein from the hyperthermophile Aquifex aeolicus. J Bacteriol, 182(6), 1616-1623. Abstract.  Author URL.
Studholme DJ, Buck M, Nixon T (2000). Identification of potential sigma(N)-dependent promoters in bacterial genomes. Microbiology, 146 Pt 12, 3021-3023. Author URL. DOI.
Studholme DJ, Buck M (2000). Novel roles of sigmaN in small genomes. Microbiology, 146 ( Pt 1), 4-5. Author URL. DOI.
Studholme DJ, Buck M (2000). The alternative sigma factor sigma(28) of the extreme thermophile Aquifex aeolicus restores motility to an Escherichia coli fliA mutant. FEMS Microbiol Lett, 191(1), 103-107. Abstract.  Author URL.
Buck M, Gallegos MT, Studholme DJ, Guo Y, Gralla JD (2000). The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor. J Bacteriol, 182(15), 4129-4136. Author URL.
Studholme DJ, Buck M (2000). The biology of enhancer-dependent transcriptional regulation in bacteria: insights from genome sequences. FEMS Microbiol Lett, 186(1), 1-9. Abstract.  Author URL.

1999

Studholme DJ, Jackson RA, Leak DJ (1999). Phylogenetic analysis of transformable strains of thermophilic Bacillus species. FEMS Microbiol Lett, 172(1), 85-90. Abstract.  Author URL.
Studholme DJ, Finn RD, Chaney MK, Buck M (1999). The C-terminal 12 amino acids of sigma(N) are required for structure and function. Arch Biochem Biophys, 371(2), 234-240. Abstract.  Author URL. DOI.