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Dr Josephine Paris

Dr Josephine Paris

Postdoctoral Research Associate

 Newman Lower Ground Floor (The Cave)

Overview

I am an evolutionary biologist using analytical approaches at the forefront of ecological genomics in order to integrate knowledge of adaptation into understanding the dynamics and conservation of wild animal populations.

Qualifications

2017 PhD Molecular Ecology and Evolution, University of Exeter

2012 BSc Ecology and Conservation, University of Sussex

Career

July 2021 - present. BBSRC Postdoctoral Research Associate, University of Exeter

2017-2021. NERC Postdoctoral Research Associate, University of Exeter (transfer from University of Sussex 2017-2018)

2017. CEFAS / The Leverhulme Trust. Postdoctoral Research Associate, University of Exeter

 

Links

Research group links

Research

Publications

Key publications | Publications by category | Publications by year

Publications by category


Journal articles

Paris JR, Whiting JR, Daniel MJ, Obiol JF, Parsons PJ, van der Zee MJ, Wheat CW, Hughes KA, Fraser BA (In Press). A large and diverse autosomal haplotype is associated with sex-linked colour polymorphism in the guppy.  Abstract.
Whiting JR, Paris JR, van der Zee MJ, Parsons PJ, Weigel D, Fraser BA (In Press). Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies.  Abstract.
Whiting JR, Paris JR, Parsons PJ, Matthews S, Reynoso Y, Hughes KA, Reznick D, Fraser BA (In Press). On the genetic architecture of rapidly adapting and convergent life history traits in guppies.  Abstract.
Whiting JR, Paris JR, van der Zee MJ, Parsons PJ, Weigel D, Fraser BA (2021). Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies. PLOS Genetics, 17(5), e1009566-e1009566. Abstract.
Lange A, Paris JR, Gharbi K, Cézard T, Miyagawa S, Iguchi T, Studholme DJ, Tyler CR (2020). A newly developed genetic sex marker and its application to understanding chemically induced feminisation in roach (. Rutilus rutilus. ). Molecular Ecology Resources, 20(4), 1007-1022. Full text.
Fraser BA, Whiting JR, Paris JR, Weadick CJ, Parsons PJ, Charlesworth D, Bergero R, Bemm F, Hoffmann M, Kottler VA, et al (2020). Improved Reference Genome Uncovers Novel Sex-Linked Regions in the Guppy (Poecilia reticulata). Genome Biology and Evolution, 12(10), 1789-1805. Abstract.  Full text.
Sherman KD, Paris J, King RA, Moore KA, Dahlgren CP, Knowles LC, Stump K, Tyler CR, Stevens JR (2020). RAD-Seq Analysis and in situ Monitoring of Nassau Grouper Reveal Fine-Scale Population Structure and Origins of Aggregating Fish. FRONTIERS IN MARINE SCIENCE, 7 Author URL.  Full text.
Paris JR, Usher J (2019). Functional genomic characterization of metallothioneins in brown trout (Salmo trutta L.). using synthetic genetic analysis. Scientific Reports, 9(1). Abstract.  Full text.
Paris JR, Usher J (2019). Publisher Correction: Functional genomic characterization of metallothioneins in brown trout (Salmo trutta L.). using synthetic genetic analysis. Sci Rep, 9(1). Abstract.  Author URL.  Full text.
Ikediashi C, Paris JR, King RA, Beaumont WRC, Ibbotson A, Stevens JR (2018). Atlantic salmon Salmo salar in the chalk streams of England are genetically unique. J Fish Biol, 92(3), 621-641. Abstract.  Author URL.  Full text.
Paris JR, Sherman KD, Bell E, Boulenger C, Delord C, El-Mahdi MBM, Fairfield EA, Griffiths AM, Gutmann Roberts C, Hedger RD, et al (2018). Understanding and managing fish populations: keeping the toolbox fit for purpose. J Fish Biol, 92(3), 727-751. Abstract.  Author URL.  Full text.
Paris JR, Stevens JR, Catchen JM (2017). Lost in parameter space: a road map for. stacks. Methods in Ecology and Evolution, 8(10), 1360-1373. Full text.
Paris JR, King RA, Stevens JR (2015). Human mining activity across the ages determines the genetic structure of modern brown trout (Salmo trutta L.) populations. Evolutionary Applications Abstract.  Full text.

Publications by year


In Press

Paris JR, Whiting JR, Daniel MJ, Obiol JF, Parsons PJ, van der Zee MJ, Wheat CW, Hughes KA, Fraser BA (In Press). A large and diverse autosomal haplotype is associated with sex-linked colour polymorphism in the guppy.  Abstract.
Whiting JR, Paris JR, van der Zee MJ, Parsons PJ, Weigel D, Fraser BA (In Press). Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies.  Abstract.
Whiting JR, Paris JR, Parsons PJ, Matthews S, Reynoso Y, Hughes KA, Reznick D, Fraser BA (In Press). On the genetic architecture of rapidly adapting and convergent life history traits in guppies.  Abstract.

2021

Whiting JR, Paris JR, van der Zee MJ, Parsons PJ, Weigel D, Fraser BA (2021). Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies. PLOS Genetics, 17(5), e1009566-e1009566. Abstract.

2020

Lange A, Paris JR, Gharbi K, Cézard T, Miyagawa S, Iguchi T, Studholme DJ, Tyler CR (2020). A newly developed genetic sex marker and its application to understanding chemically induced feminisation in roach (. Rutilus rutilus. ). Molecular Ecology Resources, 20(4), 1007-1022. Full text.
Fraser BA, Whiting JR, Paris JR, Weadick CJ, Parsons PJ, Charlesworth D, Bergero R, Bemm F, Hoffmann M, Kottler VA, et al (2020). Improved Reference Genome Uncovers Novel Sex-Linked Regions in the Guppy (Poecilia reticulata). Genome Biology and Evolution, 12(10), 1789-1805. Abstract.  Full text.
Sherman KD, Paris J, King RA, Moore KA, Dahlgren CP, Knowles LC, Stump K, Tyler CR, Stevens JR (2020). RAD-Seq Analysis and in situ Monitoring of Nassau Grouper Reveal Fine-Scale Population Structure and Origins of Aggregating Fish. FRONTIERS IN MARINE SCIENCE, 7 Author URL.  Full text.

2019

Paris JR, Usher J (2019). Functional genomic characterization of metallothioneins in brown trout (Salmo trutta L.). using synthetic genetic analysis. Scientific Reports, 9(1). Abstract.  Full text.
Paris JR, Usher J (2019). Publisher Correction: Functional genomic characterization of metallothioneins in brown trout (Salmo trutta L.). using synthetic genetic analysis. Sci Rep, 9(1). Abstract.  Author URL.  Full text.

2018

Ikediashi C, Paris JR, King RA, Beaumont WRC, Ibbotson A, Stevens JR (2018). Atlantic salmon Salmo salar in the chalk streams of England are genetically unique. J Fish Biol, 92(3), 621-641. Abstract.  Author URL.  Full text.
Paris JR, Sherman KD, Bell E, Boulenger C, Delord C, El-Mahdi MBM, Fairfield EA, Griffiths AM, Gutmann Roberts C, Hedger RD, et al (2018). Understanding and managing fish populations: keeping the toolbox fit for purpose. J Fish Biol, 92(3), 727-751. Abstract.  Author URL.  Full text.

2017

Paris JR, Stevens JR, Catchen JM (2017). Lost in parameter space: a road map for. stacks. Methods in Ecology and Evolution, 8(10), 1360-1373. Full text.

2015

Paris JR, King RA, Stevens JR (2015). Human mining activity across the ages determines the genetic structure of modern brown trout (Salmo trutta L.) populations. Evolutionary Applications Abstract.  Full text.

Josephine_Paris Details from cache as at 2021-09-28 02:30:12

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Teaching

2020            Co-director, Workshop on Genomics, evomics

2019            Co-director, Workshop on Genomics, evomics

2013 – 2017 Graduate Teaching Assistant, University of Exeter BIO2081: Bahamas Coral Reef Field Trip

2013 – 2017 Co-organiser, Population Variation Genetics, Earlham Institute (formerly The Genome Analysis Centre), Norwich, UK

2014 – 2018 Teaching Assistant, Workshop on Genomics, evomics, Czech Republic

2017 Co-organiser, RADseq Data Analysis, Physalia, Berlin, Germany

2016 Co-organiser, RAD-Sequencing analysis workshop, NTNU University Museum, Trondheim, Norway

2015 Co-organiser, Advanced course in RADSeq analyses and data interpretation, Lund University, GENECO, Sweden

2015 Teaching Assistant, Wellcome Trust Short Read Genomics Workshop, Exeter, Devon, UK

2014 Teaching Assistant, NERC Population Genomics and Metagenomics Workshop, Devon, UK

Supervision / Group

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