Publications by year
2023
Rack JGM, Ahel I (2023). A Simple Method to Study ADP-Ribosylation Reversal: from Function to Drug Discovery. In (Ed)
Methods in Molecular Biology, 111-132.
Abstract:
A Simple Method to Study ADP-Ribosylation Reversal: from Function to Drug Discovery
Abstract.
2022
Minnee H, Rack JGM, van der Marel GA, Overkleeft HS, Codee JDC, Ahel I, Filippov DV (2022). Mimetics of ADP-Ribosylated Histidine through Copper(I)-Catalyzed Click Chemistry.
ORGANIC LETTERS,
24(21), 3776-3780.
Author URL.
Hlousek-Kasun A, Mikolcevic P, Rack JGM, Tromans-Coia C, Schuller M, Jankevicius G, Matkovic M, Bertosa B, Ahel I, Mikoc A, et al (2022). Streptomyces coelicolor macrodomain hydrolase SCO6735 cleaves thymidine-linked ADP-ribosylation of DNA.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL,
20, 4337-4350.
Author URL.
2021
Beijer D, Agnew T, Rack JGM, Prokhorova E, Deconinck T, Ceulemans B, Peric S, Rasic VM, De Jonghe P, Ahel I, et al (2021). Biallelic ADPRHL2 mutations in complex neuropathy affect ADP ribosylation and DNA damage response.
LIFE SCIENCE ALLIANCE,
4(11).
Author URL.
Schuller M, Correy GJ, Gahbauer S, Fearon D, Wu T, Diaz RE, Young ID, Martins LC, Smith DH, Schulze-Gahmen U, et al (2021). Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
SCIENCE ADVANCES,
7(16).
Author URL.
Rack JGM, Liu Q, Zorzini V, Voorneveld J, Ariza A, Ebrahimi KH, Reber JM, Krassnig SC, Ahel D, van der Marel GA, et al (2021). Mechanistic insights into the three steps of poly(ADP-ribosylation) reversal.
NATURE COMMUNICATIONS,
12(1).
Author URL.
Gorbunova V, Buschbeck M, Cambronne XA, Chellappa K, Corda D, Du J, Freichel M, Gigas J, Green AE, Gu F, et al (2021). Meeting Report the 2021 FASEB science research conference on NAD metabolism and signaling.
AGING-US,
13(23), 24924-24930.
Author URL.
Voorneveld J, Rack JGM, van Gijlswijk L, Meeuwenoord NJ, Liu Q, Overkleeft HS, van Der Marel GA, Ahel I, Filippov DV (2021). Molecular Tools for the Study of ADP-Ribosylation: a Unified and Versatile Method to Synthesise Native Mono-ADP-Ribosylated Peptides.
CHEMISTRY-A EUROPEAN JOURNAL,
27(41), 10621-10627.
Author URL.
Kong L, Feng B, Yan Y, Zhang C, Kim JH, Xu L, Rack JGM, Wang Y, Jang J-C, Ahel I, et al (2021). Noncanonical mono(ADP-ribosyl)ation of zinc finger SZF proteins counteracts ubiquitination for protein homeostasis in plant immunity.
MOLECULAR CELL,
81(22), 4591-+.
Author URL.
Gorbunova V, Buschbeck M, Cambronne XA, Chellappa K, Corda D, Du J, Freichel M, Gigas J, Green AE, Gu F, et al (2021). The 2021 FASEB science research conference on NAD metabolism and signaling. Aging, 13(23), 24924-24930.
Schuetzenhofer K, Rack JGM, Ahel I (2021). The Making and Breaking of Serine-ADP-Ribosylation in the DNA Damage Response.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY,
9 Author URL.
2020
Rack JGM, Palazzo L, Ahel I (2020). (ADP-ribosyl)hydrolases: structure, function, and biology.
GENES & DEVELOPMENT,
34(5-6), 263-284.
Author URL.
Schuller M, Correy GJ, Gahbauer S, Fearon D, Wu T, Díaz RE, Young ID, Martins LC, Smith DH, Schulze-Gahmen U, et al (2020). Fragment Binding to the Nsp3 Macrodomain of SARS-CoV-2 Identified Through Crystallographic Screening and Computational Docking. , 1(12-02).
Rack JGM, Zorzini V, Zhu Z, Schuller M, Ahel D, Ahel I (2020). Viral macrodomains: a structural and evolutionary assessment of the pharmacological potential.
OPEN BIOLOGY,
10(11).
Author URL.
2019
Munnur D, Bartlett E, Mikolcevic P, Kirby IT, Rack JGM, Mikoc A, Cohen MS, Ahel I (2019). Reversible ADP-ribosylation of RNA.
NUCLEIC ACIDS RESEARCH,
47(11), 5658-5669.
Author URL.
2018
Rack JGM, Ariza A, Drown BS, Henfrey C, Bartlett E, Shirai T, Hergenrother PJ, Ahel I (2018). (ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition.
CELL CHEMICAL BIOLOGY,
25(12), 1533-+.
Author URL.
Drown BS, Shirai T, Rack JGM, Ahel I, Hergenrother PJ (2018). Monitoring Poly(ADP-ribosyl)glycohydrolase Activity with a Continuous Fluorescent Substrate.
CELL CHEMICAL BIOLOGY,
25(12), 1562-+.
Author URL.
Voorneveld J, Rack JGM, Ahel I, Overkleeft HS, van der Marel GA, Filippov DV (2018). Synthetic alpha- and beta-Ser-ADP-ribosylated Peptides Reveal alpha-Ser-ADPr as the Native Epimer.
ORGANIC LETTERS,
20(13), 4140-4143.
Author URL.
2016
Gibbs-Seymour I, Fontana P, Rack JGM, Ahel I (2016). HPF1/C4orf27 is a PARP-1-Interacting Protein that Regulates PARP-1 ADP-Ribosylation Activity.
MOLECULAR CELL,
62(3), 432-442.
Author URL.
Rack JGM, Perina D, Ahel I (2016). Macrodomains: Structure, Function, Evolution, and Catalytic Activities. In (Ed)
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 85, 431-454.
Author URL.
2015
Rack JGM, Morra R, Barkauskaite E, Kraehenbuehl R, Ariza A, Qu Y, Ortmayer M, Leidecker O, Cameron DR, Matic I, et al (2015). Identification of a Class of Protein ADP-Ribosylating Sirtuins in Microbial Pathogens.
MOLECULAR CELL,
59(2), 309-320.
Author URL.
Rack JGM, Lutter T, Kjæreng Bjerga GE, Guder C, Ehrhardt C, Värv S, Ziegler M, Aasland R (2015). The PHD finger of p300 influences its ability to acetylate histone and non-histone targets.
Journal of Molecular Biology,
426(24), 3960-3972.
Abstract:
The PHD finger of p300 influences its ability to acetylate histone and non-histone targets
In enzymes that regulate chromatin structure, the combinatorial occurrence of modules that alter and recognise histone modifications is a recurrent feature. In this study, we explored the functional relationship between the acetyltransferase domain and the adjacent bromodomain/PHD finger (bromo/PHD) region of the transcriptional coactivator p300. We found that the bromo/PHD region of p300 can bind to the acetylated catalytic domain in vitro and augment the catalytic activity of the enzyme. Deletion of the PHD finger, but not the bromodomain, impaired the ability of the enzyme to acetylate histones in vivo, whilst it enhanced p300 self-acetylation. A point mutation in the p300 PHD finger that is related to the Rubinstein-Taybi syndrome resulted in increased self-acetylation but retained the ability to acetylate histones. Hence, the PHD finger appears to negatively regulate self-acetylation. Furthermore, our data suggest that the PHD finger has a role in the recruitment of p300 to chromatin.
Abstract.
2014
Rack JGM, VanLinden MR, Lutter T, Aasland R, Ziegler M (2014). Constitutive Nuclear Localization of an Alternatively Spliced Sirtuin-2 Isoform.
JOURNAL OF MOLECULAR BIOLOGY,
426(8), 1677-1691.
Author URL.
2013
Dolle C, Rack JGM, Ziegler M (2013). NAD and ADP-ribose metabolism in mitochondria.
FEBS JOURNAL,
280(15), 3530-3541.
Author URL.