Organic Synthesis and Drug Design

Module titleOrganic Synthesis and Drug Design
Module codeBIO3089
Academic year2018/9
Credits15
Module staff

Dr Mark Wood (Convenor)

Duration: Term123
Duration: Weeks

11

Number students taking module (anticipated)

60

Description - summary of the module content

Module description

This module brings together all the organic chemistry studied in previous modules to show how we devise syntheses of complex organic molecules (with particular emphasis on drug molecules) for uses ranging from small scale, in the research laboratory, to large industrial scales. You will learn how to devise routes to new molecules, using an approach that simply "reverse engineers" the final structure. Selective methods for interchanging functional groups by reduction and oxidation will also be added to the range of chemical transformations you need to complete your synthetic schemes, and modern methods for minimising waste and environmental pollution problems in organic chemistry will be explained.

Module aims - intentions of the module

This module aims to show how, with the addition of some new reagents and reactions to those already studied in earlier modules, multi-step syntheses of complex biologically important molecules (e.g. pharmaceuticals) can be devised. By placing an emphasis on selectivity (chemo- and stereo-), you will discover how to select appropriate reagents for specific synthetic transformations and how to provide mechanistic explanations for these reactions. The module also aims to introduce the basic principles of retrosynthetic analysis and show how these are used to devise multi-step syntheses. It also aims to show how modern synthetic procedures such as combinatorial/parallel synthesis and "environmentally friendly" reagents and methodologies can be incorporated into organic synthesis.

Intended Learning Outcomes (ILOs)

ILO: Module-specific skills

On successfully completing the module you will be able to...

  • 1. Evaluate and choose appropriate reducing or oxidising agents for selective functional group transformations
  • 2. Design protecting group strategies to enable chemoselective transformations to be carried out
  • 3. Perform retrosynthetic analysis on complex organic molecules
  • 4. Devise multi-step syntheses of complex organic molecules
  • 5. Discuss the mechanisms of important organic transformations
  • 6. Explain how synthetic procedures can be modified to allow the simultaneous generation of a wide range of structurally related compounds and address environmental issues

ILO: Discipline-specific skills

On successfully completing the module you will be able to...

  • 7. Evaluate in detail approaches to our understanding of organic chemistry with reference to primary literature, reviews and research articles
  • 8. Analyse in detail essential facts and theory in a subdiscipline of the chemical and biosciences
  • 9. Analyse and evaluate independently a range of research-informed literature and synthesise research-informed examples from the literature into written work
  • 10. With limited guidance, deploy established techniques of analysis and enquiry within the chemical and biosciences

ILO: Personal and key skills

On successfully completing the module you will be able to...

  • 11. Communicate effectively arguments, evidence and conclusions using written and oral means in a manner appropriate to the intended audience
  • 12. Devise and sustain, with little guidance, a logical and reasoned argument with sound, convincing conclusions
  • 13. Analyse and evaluate appropriate data with very limited guidance

Syllabus plan

Syllabus plan

The concept of oxidation level in the context of organic functional groups will be introduced and exemplified with hydrocarbons, oxygen and nitrogen-containing groups and organic halides, along with a reminder of the definitions of chemo-, regio- and stereoselectivity. Examples of commonly encountered reduction methods/reagents will be given, including catalytic hydrogenation, dissolving metal reduction, hydride-transfer reagents and Wolff-Kishner reduction.

Oxidation will be approached from the perspective of the functional group being oxidised. This section of the module will cover oxidation of alcohols, aldehydes, ketones and alkenes.

Issues of chemoselectivity will be addressed in an examination of the most important protecting groups for alcohols, aldehydes, ketones, carboxylic acids and amines.

The synthesis of polyfunctional organic molecules will be introduced using a retrosynthetic analysis. Standard "disconnections" will be covered, along with the appropriate "synthons".

The central concept of carbon-carbon single bond formation for the construction of complex molecules will be illustrated with the use of organometallic reagents, carbanions and enolates. The formation of carbon-carbon double bonds will also be covered by an introduction to Wittig, Horner-Wadsworth-Emmons and Julia reactions.

Learning and teaching

Learning activities and teaching methods (given in hours of study time)

Scheduled Learning and Teaching ActivitiesGuided independent studyPlacement / study abroad
261240

Details of learning activities and teaching methods

CategoryHours of study timeDescription
Scheduled Learning and Teaching20Lectures
Scheduled Learning and Teaching6Small group tutorials
Guided Independent Study12Problem-based coursework
Guided Independent Study112Guided reading of literature, literature research and revision

Assessment

Formative assessment

Form of assessmentSize of the assessment (eg length / duration)ILOs assessedFeedback method
Small group tutorials which give feedback on CA tests and additional non-assessed problemsOngoingAllOral in small group tutorials

Summative assessment (% of credit)

CourseworkWritten examsPractical exams
40600

Details of summative assessment

Form of assessment% of creditSize of the assessment (eg length / duration)ILOs assessedFeedback method
Problem sheet 1203 hoursAllWritten, model answers
Problem sheet 2203 hoursAllWritten, model answers
Essay and problem-based examination602 hoursAllWritten

Re-assessment

Details of re-assessment (where required by referral or deferral)

Original form of assessmentForm of re-assessmentILOs re-assessedTimescale for re-assessment
Problem sheet 1Not applicableNot applicableNot applicable
Problem sheet 2Not applicableNot applicableNot applicable
Essay and problem-based examinationEssay and problem-based examinationAllAugust Ref/Def

Re-assessment notes

Deferral – if you miss an assessment for certificated reasons judged acceptable by the Mitigation Committee, you will normally be either deferred in the assessment or an extension may be granted. The problem sheets are not deferrable because of their practical nature. The mark given for a re-assessment taken as a result of deferral will not be capped and will be treated as it would be if it were your first attempt at the assessment.

Referral – if you have failed the module overall (i.e. a final overall module mark of less than 40%) you will be required to sit a further examination. The mark given for a re-assessment taken as a result of referral will count for 100% of the final mark and will be capped at 40%.

Resources

Indicative learning resources - Basic reading

  • J. Clayden, N. Greeves and S. Warren, Organic Chemistry (Second Edition), Oxford University Press, 2012, ISBN 0-19-927029-5 (essential core text)
  • C. Willis and M. Wills, Organic Synthesis, (Oxford Chemistry Primer 31), Oxford University Press, 1995, ISBN 0-19-855791-4

Indicative learning resources - Web based and electronic resources

Module has an active ELE page

Key words search

Molecules, reduction, oxidation, synthetic schemes, drug design

Credit value15
Module ECTS

7.5

Module pre-requisites

BIO2085 Structure and Reactivity of Organic Compounds 2

Module co-requisites

None

NQF level (module)

6

Available as distance learning?

No

Origin date

03/01/2014

Last revision date

09/03/2018